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Nonparametric estimation of population-averaged transition probabilities, with cluster-bootstrap pointwise confidence intervals, simultaneous confidence bands, and two-sample Kolmogorov-Smirnov-type tests for clustered or independent multistate process data. Estimation follows Bakoyannis (2021) <doi:10.1111/biom.13327>; two-sample inference for the cluster-randomized and independent-samples designs follows Bakoyannis and Bandyopadhyay (2022) <doi:10.1007/s10463-021-00819-x>. Both methods use the working-independence Aalen-Johansen estimator. The package supports both progressive (acyclic) and non-monotone (e.g., illness-death with recovery) multistate processes, right censoring, left truncation, and informative cluster size. The user supplies data in interval format (one row per mutually-exclusive time interval per subject) and interacts with the package through a single formula-based function, patp().
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | survival, stats, utils |
| Suggests: | mstate, testthat (≥ 3.0.0), knitr, rmarkdown |
| Published: | 2026-05-27 |
| DOI: | 10.32614/CRAN.package.clusteredMSM |
| Author: | Giorgos Bakoyannis
|
| Maintainer: | Giorgos Bakoyannis <gbakogia at iu.edu> |
| BugReports: | https://github.com/gbakoyannis/clusteredMSM/issues |
| License: | GPL-3 |
| URL: | https://github.com/gbakoyannis/clusteredMSM |
| NeedsCompilation: | no |
| Citation: | clusteredMSM citation info |
| Materials: | README, NEWS |
| CRAN checks: | clusteredMSM results |
| Reference manual: | clusteredMSM.html , clusteredMSM.pdf |
| Vignettes: |
Getting started with clusteredMSM (source, R code) |
| Package source: | clusteredMSM_0.1.0.tar.gz |
| Windows binaries: | r-devel: clusteredMSM_0.1.0.zip, r-release: clusteredMSM_0.1.0.zip, r-oldrel: clusteredMSM_0.1.0.zip |
| macOS binaries: | r-release (arm64): clusteredMSM_0.1.0.tgz, r-oldrel (arm64): clusteredMSM_0.1.0.tgz, r-release (x86_64): clusteredMSM_0.1.0.tgz, r-oldrel (x86_64): clusteredMSM_0.1.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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