The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
cinaR: A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data
analyses. This package combines different packages to have an ultimate package
for both data analyses and visualization of 'ATAC-seq' data. Methods are described in
'Karakaslar et al.' (2021) <doi:10.1101/2021.03.05.434143>.
| Version: |
0.2.6 |
| Depends: |
R (≥ 4.0.0) |
| Imports: |
BiocManager, DESeq2, dplyr, edgeR, fgsea, GenomicRanges, ggplot2, ggrepel, grDevices, limma, methods, utils, pheatmap, preprocessCore, RColorBrewer, sva, writexl |
| Suggests: |
ChIPseeker, knitr, Matrix, Seurat, rmarkdown, markdown, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene |
| Published: |
2026-02-04 |
| DOI: |
10.32614/CRAN.package.cinaR |
| Author: |
Onur Karakaslar 
[aut, cre],
Duygu Ucar [aut] |
| Maintainer: |
Onur Karakaslar <eonurkara at gmail.com> |
| BugReports: |
https://github.com/eonurk/cinaR/issues/ |
| License: |
GPL-3 |
| URL: |
https://github.com/eonurk/cinaR/, https://eonurk.github.io/cinaR/ |
| NeedsCompilation: |
no |
| Citation: |
cinaR citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
cinaR results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=cinaR
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.