branchingprocess: Calculate Outbreak Probabilities for a Branching Process Model

Quantify outbreak risk posed by individual importers of a transmissible pathogen. Input parameters of negative binomial offspring distributions for the number of transmissions from each infected individual and initial number of infected. Calculate probabilities of final outbreak size and generations of transmission, as described in Toth et al. (2015) <doi:10.3201/eid2108.150170> and Toth et al. (2016) <doi:10.1016/j.epidem.2016.04.002>.

Version:	0.1.0
Imports:	stats
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2025-04-25
DOI:	10.32614/CRAN.package.branchingprocess
Author:	Damon Toth [aut, cre], Erin Clancey [ctb], Centers for Disease Control and Prevention's Center for Forecasting and Outbreak Analytics [fnd] (Cooperative agreement CDC-RFA-FT-23-0069)
Maintainer:	Damon Toth <damon.toth at hsc.utah.edu>
BugReports:	https://github.com/EpiForeSITE/branchingprocess/issues
License:	MIT + file LICENSE
URL:	https://github.com/EpiForeSITE/branchingprocess, https://epiforesite.github.io/branchingprocess/
NeedsCompilation:	no
Citation:	branchingprocess citation info
Materials:	README NEWS
CRAN checks:	branchingprocess results

Documentation:

Reference manual:	branchingprocess.pdf
Vignettes:	H5N1 Example (source, R code)

Downloads:

Package source:	branchingprocess_0.1.0.tar.gz
Windows binaries:	r-devel: not available, r-release: branchingprocess_0.1.0.zip, r-oldrel: branchingprocess_0.1.0.zip
macOS binaries:	r-release (arm64): branchingprocess_0.1.0.tgz, r-oldrel (arm64): branchingprocess_0.1.0.tgz, r-release (x86_64): branchingprocess_0.1.0.tgz, r-oldrel (x86_64): branchingprocess_0.1.0.tgz

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