banffIT: Automatize Diagnosis Standardized Assignation Using the Banff Classification

Assigns standardized diagnoses using the Banff Classification (Category 1 to 6 diagnoses, including Acute and Chronic active T-cell mediated rejection as well as Active, Chronic active, and Chronic antibody mediated rejection). The main function considers a minimal dataset containing biopsies information in a specific format (described by a data dictionary), verifies its content and format (based on the data dictionary), assigns diagnoses, and creates a summary report. The package is developed on the reference guide to the Banff classification of renal allograft pathology Roufosse C, Simmonds N, Clahsen-van Groningen M, et al. A (2018) <doi:10.1097/TP.0000000000002366>. The full description of the Banff classification is available at <https://banfffoundation.org/>.

Version:	1.0.0
Depends:	R (≥ 3.4)
Imports:	dplyr (≥ 1.1.0), rlang, tools, utils, crayon, stringr, fs, lubridate, tidyr, fabR, madshapR
Suggests:	knitr, rmarkdown, usethis
Published:	2024-05-08
DOI:	10.32614/CRAN.package.banffIT
Author:	Guillaume Fabre [aut, cre], Ruth Sapir-Pichhadze [fnd, cph, ctb], Samuel El Bouzaïdi Tiali [ctb], Jérôme Laforme [ctb], Tina Wey [ctb]
Maintainer:	Guillaume Fabre <guijoseph.fabre at gmail.com>
BugReports:	https://github.com/PersonalizedTransplantCare/banffIT/issues
License:	GPL-3
URL:	https://github.com/PersonalizedTransplantCare/banffIT
NeedsCompilation:	no
Language:	en-US
Materials:	README NEWS
CRAN checks:	banffIT results

Documentation:

Reference manual:	banffIT.pdf
Vignettes:	banffIT-vignette

Downloads:

Package source:	banffIT_1.0.0.tar.gz
Windows binaries:	r-devel: banffIT_1.0.0.zip, r-release: banffIT_1.0.0.zip, r-oldrel: banffIT_1.0.0.zip
macOS binaries:	r-release (arm64): banffIT_1.0.0.tgz, r-oldrel (arm64): banffIT_1.0.0.tgz, r-release (x86_64): banffIT_1.0.0.tgz, r-oldrel (x86_64): banffIT_1.0.0.tgz

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