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The banffIT package provides functions to assign standardized diagnoses using the Banff Classification (Category 1 to 6 diagnoses, including Acute and Chronic active T-cell mediated rejection as well as Active, Chronic active, and Chronic antibody mediated rejection). The main function banff_launcher()considers a minimal dataset containing biopsies information in a specific format (described by a data dictionary), verifies its content and format (based on the data dictionary), assigns diagnoses, and creates a summary report.
also available in R using get_banff_dictionary()
also available in R using get_banff_template()
also available in R using get_banff_example()
# To install banffIT
install.packages('banffIT')
library(banffIT)
# If you need help with the package, please use:
banffIT_website()
# use example
input_file = system.file("extdata", "example.xlsx", package = "banffIT")
banff_launcher(
input_file = input_file,
output_folder = tempdir(), # 'folder_path/example'
language = 'label:en',
option_filter = adequacy == 1,
detail = TRUE)These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.