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agvgd: An R Implementation of the 'Align-GVGD' Method
'Align-GVGD' ('A-GVGD') is a method to predict the impact of
'missense' substitutions based on the properties of amino acid side
chains and protein multiple sequence alignments
<doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original
'Grantham' distance to multiple sequence alignments. This package
provides an alternative R implementation to the web version found on
<http://agvgd.hci.utah.edu/>.
| Version: |
0.1.2 |
| Depends: |
R (≥ 2.10) |
| Imports: |
crayon, dplyr, glue, grantham, magrittr, purrr, rlang, seqinr, stringr, tibble, tidyr, vctrs |
| Suggests: |
rmarkdown, covr, testthat (≥ 3.0.0) |
| Published: |
2022-09-10 |
| Author: |
Ramiro Magno 
[aut, cre],
Isabel Duarte
[aut],
Ana-Teresa Maia
[aut],
CINTESIS [cph, fnd] |
| Maintainer: |
Ramiro Magno <ramiro.magno at gmail.com> |
| BugReports: |
https://github.com/maialab/agvgd/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://maialab.org/agvgd/, https://github.com/maialab/agvgd |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| In views: |
Omics |
| CRAN checks: |
agvgd results |
Documentation:
Downloads:
Linking:
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https://CRAN.R-project.org/package=agvgd
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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