admixr: An Interface for Running 'ADMIXTOOLS' Analyses

An interface for performing all stages of 'ADMIXTOOLS' analyses (<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.

Version:	0.9.1
Depends:	R (≥ 3.6.0)
Imports:	dplyr, magrittr, readr, stringr, tibble, stats, rlang, utils
Suggests:	covr, glue, testthat, tidyr, knitr, rmarkdown, tidyverse
Published:	2020-07-03
DOI:	10.32614/CRAN.package.admixr
Author:	Martin Petr [aut, cre]
Maintainer:	Martin Petr <contact at bodkan.net>
BugReports:	https://github.com/bodkan/admixr/issues
License:	MIT + file LICENSE
URL:	https://github.com/bodkan/admixr
NeedsCompilation:	no
SystemRequirements:	ADMIXTOOLS suite of command-line utilities for population genetics. See <https://reich.hms.harvard.edu/software> for the most recent installation instructions and further information.
Materials:	README NEWS
CRAN checks:	admixr results

Documentation:

Reference manual:	admixr.pdf
Vignettes:	Fitting qpAdm models with a 'rotation' strategy Tutorial and basic overview of the admixr R package

Downloads:

Package source:	admixr_0.9.1.tar.gz
Windows binaries:	r-devel: admixr_0.9.1.zip, r-release: admixr_0.9.1.zip, r-oldrel: admixr_0.9.1.zip
macOS binaries:	r-release (arm64): admixr_0.9.1.tgz, r-oldrel (arm64): admixr_0.9.1.tgz, r-release (x86_64): admixr_0.9.1.tgz, r-oldrel (x86_64): admixr_0.9.1.tgz

Reverse dependencies:

Reverse suggests:

slendr

Linking:

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