acoRn: Exclusion-Based Parentage Assignment Using Multilocus Genotype Data

Exclusion-based parentage assignment is essential for studies in biodiversity conservation and breeding programs - Kang Huang, Rui Mi, Derek W Dunn, Tongcheng Wang, Baoguo Li, (2018), <doi:10.1534/genetics.118.301592>. The tool compares multilocus genotype data of potential parents and offspring, identifying likely parentage relationships while accounting for genotyping errors, missing data, and duplicate genotypes. 'acoRn' includes two algorithms: one generates synthetic genotype data based on user-defined parameters, while the other analyzes existing genotype data to identify parentage patterns. The package is versatile, applicable to diverse organisms, and offers clear visual outputs, making it a valuable resource for researchers.

Version:	0.1.0
Depends:	R (≥ 2.10)
Imports:	data.table, stringr, stringi
Suggests:	testthat (≥ 3.0.0)
Published:	2024-10-02
DOI:	10.32614/CRAN.package.acoRn
Author:	Nikos Pechlivanis [aut, cre], Fotis Psomopoulos [aut], Aristotelis Papageorgiou [aut]
Maintainer:	Nikos Pechlivanis <npechlv at gmail.com>
License:	MIT + file LICENSE
NeedsCompilation:	no
Materials:	README
CRAN checks:	acoRn results

Documentation:

Reference manual:

acoRn.pdf

Downloads:

Package source:	acoRn_0.1.0.tar.gz
Windows binaries:	r-devel: acoRn_0.1.0.zip, r-release: acoRn_0.1.0.zip, r-oldrel: acoRn_0.1.0.zip
macOS binaries:	r-release (arm64): acoRn_0.1.0.tgz, r-oldrel (arm64): acoRn_0.1.0.tgz, r-release (x86_64): acoRn_0.1.0.tgz, r-oldrel (x86_64): acoRn_0.1.0.tgz

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