The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
A canonical correlation based framework (SmCCNet) designed for the construction of phenotype-specific multi-omics networks. This framework adeptly integrates single or multiple omics data types along with a quantitative or binary phenotype of interest. It offers a streamlined setup process that can be tailored manually or configured automatically, ensuring a flexible and user-friendly experience.
| Version: | 2.0.3 |
| Depends: | R (≥ 3.5) |
| Imports: | EnvStats, future, pROC, spls, Matrix, pbapply, igraph, magrittr, rlist, furrr, purrr, pracma |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), dplyr, reshape2, shadowtext, tidyverse, parallel, mltools, caret |
| Published: | 2024-04-16 |
| DOI: | 10.32614/CRAN.package.SmCCNet |
| Author: | Weixuan Liu [aut, cre], Yonghua Zhuang [aut, cre], W. Jenny Shi [aut, cre], Thao Vu [aut], Iain Konigsberg [aut], Katherine Pratte [aut], Laura Saba [aut], Katerina Kechris [aut] |
| Maintainer: | Weixuan Liu <weixuan.liu at cuanschutz.edu> |
| License: | GPL-3 |
| URL: | https://github.com/KechrisLab/SmCCNet, https://kechrislab.github.io/SmCCNet/, https://liux4283.github.io/SmCCNet/ |
| NeedsCompilation: | no |
| Materials: | NEWS |
| In views: | Omics |
| CRAN checks: | SmCCNet results |
| Reference manual: | SmCCNet.pdf |
| Vignettes: |
Automated SmCCNet Reconstructing phenotype-specific multi-omics networks with SmCCNet Reconstructing Phenotype-Specific Single-Omics Networks with SmCCNet |
| Package source: | SmCCNet_2.0.3.tar.gz |
| Windows binaries: | r-devel: SmCCNet_2.0.3.zip, r-release: SmCCNet_2.0.3.zip, r-oldrel: SmCCNet_2.0.3.zip |
| macOS binaries: | r-release (arm64): SmCCNet_2.0.3.tgz, r-oldrel (arm64): SmCCNet_2.0.3.tgz, r-release (x86_64): SmCCNet_2.0.3.tgz, r-oldrel (x86_64): SmCCNet_2.0.3.tgz |
| Old sources: | SmCCNet archive |
Please use the canonical form https://CRAN.R-project.org/package=SmCCNet to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.