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A collection of methods for estimating the basic reproduction number (R0) of infectious diseases. Features a web application to interface with the estimators. Uses the models from: Fisman et al. (2013) <doi:10.1371/journal.pone.0083622>, Bettencourt and Ribeiro (2008) <doi:10.1371/journal.pone.0002185>, and White and Pagano (2008) <doi:10.1002/sim.3136>. Includes datasets for Canadian national and provincial COVID-19 case counts provided by Berry et al. (2021) <doi:10.1038/s41597-021-00955-2>.
| Version: | 0.1.0 |
| Depends: | R (≥ 2.10) |
| Imports: | stats, utils |
| Suggests: | knitr, rmarkdown, shiny, bslib, DT, plotly, testthat (≥ 3.0.0) |
| Published: | 2025-09-02 |
| DOI: | 10.32614/CRAN.package.Rnaught |
| Author: | Naeem Model [aut, cph, cre], Sawitree Boonpatcharanon [aut, cph], Jane Heffernan [aut, cph], Hanna Jankowski [aut, cph], Tatiana Krikella [aut, cph], Kseniia Lipikhin [ctb, cph] |
| Maintainer: | Naeem Model <me at nmode.ca> |
| BugReports: | https://github.com/MI2YorkU/Rnaught/issues |
| License: | AGPL (≥ 3) |
| URL: | https://mi2yorku.github.io/Rnaught/, https://github.com/MI2YorkU/Rnaught |
| NeedsCompilation: | no |
| Citation: | Rnaught citation info |
| Materials: | README, NEWS |
| CRAN checks: | Rnaught results |
| Reference manual: | Rnaught.html , Rnaught.pdf |
| Vignettes: |
Introduction to Rnaught (source, R code) Sequential Bayes: Utilizing the Posterior Distribution (source, R code) White and Pagano: Utilizing the Serial Distribution (source, R code) |
| Package source: | Rnaught_0.1.0.tar.gz |
| Windows binaries: | r-devel: Rnaught_0.1.0.zip, r-release: Rnaught_0.1.0.zip, r-oldrel: Rnaught_0.1.0.zip |
| macOS binaries: | r-release (arm64): Rnaught_0.1.0.tgz, r-oldrel (arm64): Rnaught_0.1.0.tgz, r-release (x86_64): Rnaught_0.1.0.tgz, r-oldrel (x86_64): Rnaught_0.1.0.tgz |
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These binaries (installable software) and packages are in development.
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