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Rnaught is an R package and web application for estimating the basic reproduction number (R0) of infectious diseases.
An instance of the web application is available at https://immune.math.yorku.ca/Rnaught.
install.packages("Rnaught")install.packages("devtools") # If not already installed.
devtools::install_github("MI2YorkU/Rnaught", build_vignettes = TRUE)The package documentation is available online at https://mi2yorku.github.io/Rnaught/.
For a quick introduction, see the Get
started page. This can also be accessed from an R session with
vignette("Rnaught", package = "Rnaught").
To view the documentation locally, run
?Rnaught::<function>. A list of all functions is
shown in the package index by executing
help(package = "Rnaught").
The source code for this package is available on GitHub.
To report a bug, request a new feature, give feedback, or ask questions, open a new issue.
Submit new estimators, features, bug fixes, or patches by creating a pull request.
Copyright © 2022 - 2025 Rnaught contributors
This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License along with this program. If not, see https://www.gnu.org/licenses/.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.