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R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.
Version: | 0.1.6 |
Imports: | withr (≥ 2.4.3), rlang (≥ 0.4.12), stringi (≥ 1.7.6), data.tree (≥ 1.0.0), tidyr (≥ 1.1.4), tibble (≥ 3.1.6), dplyr (≥ 1.0.7), RJSONIO (≥ 1.3-1.6), magrittr (≥ 2.0.1) |
Suggests: | DiagrammeR (≥ 1.0.6.1), DiagrammeRsvg (≥ 0.1), rsvg (≥ 2.2.0), rmarkdown (≥ 2.11), knitr (≥ 1.36), GenomicRanges (≥ 1.46.1), rtracklayer (≥ 1.54.0), S4Vectors (≥ 0.32.3) |
Published: | 2022-09-30 |
DOI: | 10.32614/CRAN.package.Rgff |
Author: | Juan Antonio Garcia-Martin
|
Maintainer: | Juan Antonio Garcia-Martin <ja.garcia at cnb.csic.es> |
License: | GPL (≥ 3) |
NeedsCompilation: | no |
Materials: | NEWS |
CRAN checks: | Rgff results |
Reference manual: | Rgff.pdf |
Vignettes: |
Using Rgff |
Package source: | Rgff_0.1.6.tar.gz |
Windows binaries: | r-devel: Rgff_0.1.6.zip, r-release: Rgff_0.1.6.zip, r-oldrel: Rgff_0.1.6.zip |
macOS binaries: | r-release (arm64): Rgff_0.1.6.tgz, r-oldrel (arm64): Rgff_0.1.6.tgz, r-release (x86_64): Rgff_0.1.6.tgz, r-oldrel (x86_64): Rgff_0.1.6.tgz |
Old sources: | Rgff archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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