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Ravages: Rare Variant Analysis and Genetic Simulations

Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>) in the whole genome; and genetic simulations.

Version: 1.1.3
Depends: R (≥ 3.5.0), Rcpp, RcppParallel, methods, gaston, mlogit (≥ 1.1-0)
Imports: Formula, dfidx, parallel, bedr, curl, data.table
LinkingTo: Rcpp, RcppParallel, RcppEigen, gaston, BH
Suggests: knitr, rmarkdown
Published: 2023-03-28
DOI: 10.32614/CRAN.package.Ravages
Author: Ozvan Bocher and Hervé Perdry
Maintainer: Ozvan Bocher <bocherozvan at gmail.com>
License: GPL-3
NeedsCompilation: yes
Materials: NEWS
CRAN checks: Ravages results

Documentation:

Reference manual: Ravages.pdf
Vignettes: "Ravages_Simulations"
Ravages_Association

Downloads:

Package source: Ravages_1.1.3.tar.gz
Windows binaries: r-devel: Ravages_1.1.3.zip, r-release: Ravages_1.1.3.zip, r-oldrel: Ravages_1.1.3.zip
macOS binaries: r-release (arm64): Ravages_1.1.3.tgz, r-oldrel (arm64): Ravages_1.1.3.tgz, r-release (x86_64): Ravages_1.1.3.tgz, r-oldrel (x86_64): Ravages_1.1.3.tgz
Old sources: Ravages archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=Ravages to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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