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Calculates the number of four-taxon subtrees consistent with a pair of cladograms, calculating the symmetric quartet distance of Bandelt & Dress (1986), Reconstructing the shape of a tree from observed dissimilarity data, Advances in Applied Mathematics, 7, 309-343 <doi:10.1016/0196-8858(86)90038-2>, and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for computing the quartet and triplet distances between binary or general trees, Bioinformatics, 30, 2079–2080 <doi:10.1093/bioinformatics/btu157> for pairs of binary trees.
Version: | 1.2.6 |
Depends: | R (≥ 3.5.0), TreeTools (≥ 1.4.0) |
Imports: | ape, Rdpack (≥ 0.7), Ternary (≥ 1.0), viridisLite |
LinkingTo: | Rcpp |
Suggests: | bookdown, knitr, phangorn, Rcpp, rmarkdown, testthat, usethis, vdiffr |
Published: | 2024-02-09 |
DOI: | 10.32614/CRAN.package.Quartet |
Author: | Martin R. Smith |
Maintainer: | Martin R. Smith <martin.smith at durham.ac.uk> |
BugReports: | https://github.com/ms609/Quartet/issues/ |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
Copyright: | Incorporates code modified from tqDist <doi:10.1093/bioinformatics/btu157>. |
URL: | https://ms609.github.io/Quartet/, https://github.com/ms609/Quartet/ |
NeedsCompilation: | yes |
Language: | en-GB |
Citation: | Quartet citation info |
Materials: | README NEWS |
In views: | Phylogenetics |
CRAN checks: | Quartet results |
Reference manual: | Quartet.pdf |
Vignettes: |
About the quartet distance Getting started with Quartet |
Package source: | Quartet_1.2.6.tar.gz |
Windows binaries: | r-devel: Quartet_1.2.6.zip, r-release: Quartet_1.2.6.zip, r-oldrel: Quartet_1.2.6.zip |
macOS binaries: | r-release (arm64): Quartet_1.2.6.tgz, r-oldrel (arm64): Quartet_1.2.6.tgz, r-release (x86_64): Quartet_1.2.6.tgz, r-oldrel (x86_64): Quartet_1.2.6.tgz |
Old sources: | Quartet archive |
Reverse suggests: | CongreveLamsdell2016, TreeDist, TreeSearch |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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