Quartet: Comparison of Phylogenetic Trees Using Quartet and Split
Measures
Calculates the number of four-taxon subtrees consistent with a pair
of cladograms, calculating the symmetric quartet distance of Bandelt & Dress
(1986), Reconstructing the shape of a tree from observed dissimilarity data,
Advances in Applied Mathematics, 7, 309-343 <doi:10.1016/0196-8858(86)90038-2>,
and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for
computing the quartet and triplet distances between binary or general trees,
Bioinformatics, 30, 2079–2080 <doi:10.1093/bioinformatics/btu157>
for pairs of binary trees.
| Version: |
1.2.6 |
| Depends: |
R (≥ 3.5.0), TreeTools (≥ 1.4.0) |
| Imports: |
ape, Rdpack (≥ 0.7), Ternary (≥ 1.0), viridisLite |
| LinkingTo: |
Rcpp |
| Suggests: |
bookdown, knitr, phangorn, Rcpp, rmarkdown, testthat, usethis, vdiffr |
| Published: |
2024-02-09 |
| Author: |
Martin R. Smith 
[aut, cre, cph],
Andreas Sand [ant],
Gerth Stølting Brodal [ant],
Rolf Fagerberg [ant],
Thomas Mailund [ant],
Christian N. S. Pedersen [ant],
Jens Johansen [ant],
Morten K. Holt [ant] |
| Maintainer: |
Martin R. Smith <martin.smith at durham.ac.uk> |
| BugReports: |
https://github.com/ms609/Quartet/issues/ |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: |
Incorporates code modified from tqDist
<doi:10.1093/bioinformatics/btu157>. |
| URL: |
https://ms609.github.io/Quartet/,
https://github.com/ms609/Quartet/ |
| NeedsCompilation: |
yes |
| Language: |
en-GB |
| Citation: |
Quartet citation info |
| Materials: |
README NEWS |
| In views: |
Phylogenetics |
| CRAN checks: |
Quartet results |
Documentation:
Downloads:
Reverse dependencies:
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