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QuartetStates()
handles absent leaves gracefully.TreeTools::in.Splits()
.CompareQuartetsMulti()
compares quartet status in one tree with status in multiple others.VisualizeQuartets()
depicts contribution of splits to quartet score.SimilarityToReference()
allows comparison against specified reference topology.RobinsonFoulds()
: renamed to RawSymmetricDifference()
.QuartetState[s]()
now uses sister-of-4 notation, rather than sister-of-1, to give values within [0, 3].ManyToManyQuartetAgreement()
now returns entries for N
and Q
.AllQuartets()
and QuartetStates()
.QuartetStatus()
now supports non-identical leaf samples.SimilarityMetrics()
now handles single tree comparisons.PlotQuartet()
.TreeTools
in place of TreeSearch
, supporting new Splits
class.ptr_fun
.sq_trees
, to illustrate issues with partition-based distance metrics.github_install
.SimilarityMetrics
now takes the output of QuartetStatus(trees)
, rather than a list of trees.SplitStatus
now returns output using the same column headers as QuartetStatus
N
added to QuartetStatus
output.QuartetMetrics
→ SimilarityMetrics
MatchingSplits
→ SplitStatus
MatchingQuartets
→ QuartetStatus
Choices
→ AllQuartets
MatchingSplits
function to calculate number of splits contradicted / unresolved.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.