PepMapViz: A Versatile Toolkit for Peptide Mapping, Visualization, and Comparative Exploration

A versatile R visualization package that empowers researchers with comprehensive visualization tools for seamlessly mapping peptides to protein sequences, identifying distinct domains and regions of interest, accentuating mutations, and highlighting post-translational modifications, all while enabling comparisons across diverse experimental conditions. Potential applications of 'PepMapViz' include the visualization of cross-software mass spectrometry results at the peptide level for specific protein and domain details in a linearized format and post-translational modification coverage across different experimental conditions; unraveling insights into disease mechanisms. It also enables visualization of major histocompatibility complex-presented peptides in different antibody regions predicting immunogenicity in antibody drug development.

Version:	1.0.0
Imports:	ggplot2, stringr, ggforce, ggh4x, ggnewscale, data.table, rlang
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2024-11-13
DOI:	10.32614/CRAN.package.PepMapViz
Author:	Zhenru Zhou [aut, cre], Qui Phung [ctb], Corey Bakalarski [aut], Genentech, Inc. [cph]
Maintainer:	Zhenru Zhou <zhou.zhenru at gene.com>
License:	MIT + file LICENSE
NeedsCompilation:	no
Materials:	README
CRAN checks:	PepMapViz results

Documentation:

Reference manual:	PepMapViz.pdf
Vignettes:	PepMapViz: A Versatile Toolkit for Peptide Mapping, Visualization, and Comparative Exploration (source, R code)

Downloads:

Package source:	PepMapViz_1.0.0.tar.gz
Windows binaries:	r-devel: PepMapViz_1.0.0.zip, r-release: PepMapViz_1.0.0.zip, r-oldrel: PepMapViz_1.0.0.zip
macOS binaries:	r-release (arm64): PepMapViz_1.0.0.tgz, r-oldrel (arm64): PepMapViz_1.0.0.tgz, r-release (x86_64): PepMapViz_1.0.0.tgz, r-oldrel (x86_64): PepMapViz_1.0.0.tgz

Linking:

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