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OncoSubtype: Predict Cancer Subtypes Based on TCGA Data using Machine Learning Method

Provide functionality for cancer subtyping using nearest centroids or machine learning methods based on TCGA data.

Version: 1.0.0
Depends: SummarizedExperiment, R (≥ 3.63)
Imports: caret, randomForest, methods, e1071, pheatmap, tibble, dplyr, limma, rlang, Rdpack
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2024-03-22
DOI: 10.32614/CRAN.package.OncoSubtype
Author: Dadong Zhang
Maintainer: Dadong Zhang <dadong.zhang.shared at gmail.com>
BugReports: https://github.com/DadongZ/OncoSubtype/issues
License: GPL-3
URL: https://github.com/DadongZ/OncoSubtype
NeedsCompilation: no
Materials: README
CRAN checks: OncoSubtype results

Documentation:

Reference manual: OncoSubtype.pdf
Vignettes: OncoSubtype

Downloads:

Package source: OncoSubtype_1.0.0.tar.gz
Windows binaries: r-devel: OncoSubtype_1.0.0.zip, r-release: OncoSubtype_1.0.0.zip, r-oldrel: OncoSubtype_1.0.0.zip
macOS binaries: r-release (arm64): OncoSubtype_1.0.0.tgz, r-oldrel (arm64): OncoSubtype_1.0.0.tgz, r-release (x86_64): OncoSubtype_1.0.0.tgz, r-oldrel (x86_64): OncoSubtype_1.0.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=OncoSubtype to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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