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There is an increasing interest in investigating how the compositions of microbial communities are associated with human health and disease. In this package, we present a novel global testing method called aMiSPU, that is highly adaptive and thus high powered across various scenarios, alleviating the issue with the choice of a phylogenetic distance. Our simulations and real data analysis demonstrated that aMiSPU test was often more powerful than several competing methods while correctly controlling type I error rates.
| Version: | 1.0 |
| Depends: | R (≥ 3.2.3), vegan, ape, aSPU, cluster |
| Imports: | Rcpp (≥ 0.12.1) |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | ade4 |
| Published: | 2016-03-18 |
| DOI: | 10.32614/CRAN.package.MiSPU |
| Author: | Chong Wu, Wei Pan |
| Maintainer: | Chong Wu <wuxx0845 at umn.edu> |
| License: | GPL-2 |
| NeedsCompilation: | yes |
| CRAN checks: | MiSPU results |
| Reference manual: | MiSPU.pdf |
| Package source: | MiSPU_1.0.tar.gz |
| Windows binaries: | r-devel: MiSPU_1.0.zip, r-release: MiSPU_1.0.zip, r-oldrel: MiSPU_1.0.zip |
| macOS binaries: | r-release (arm64): MiSPU_1.0.tgz, r-oldrel (arm64): MiSPU_1.0.tgz, r-release (x86_64): MiSPU_1.0.tgz, r-oldrel (x86_64): MiSPU_1.0.tgz |
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