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A set of functions to investigate raw data from (metabol)omics experiments intended to be used on a raw data matrix, i.e. following peak picking and signal deconvolution. Functions can be used to normalize data, detect biomarkers and perform sample classification. A detailed description of best practice usage may be found in the publication <doi:10.1007/978-1-4939-7819-9_20>.
Version: | 1.4.5 |
Depends: | R (≥ 2.10.0) |
Imports: | C50, caret, e1071, InterpretMSSpectrum, pcaMethods, plyr, rpart, rlang, webchem |
Suggests: | mixOmics, ropls, xcms |
Published: | 2024-01-31 |
DOI: | 10.32614/CRAN.package.MetabolomicsBasics |
Author: | Jan Lisec [aut, cre] |
Maintainer: | Jan Lisec <jan.lisec at bam.de> |
License: | GPL-3 |
URL: | https://github.com/janlisec/MetabolomicsBasics |
NeedsCompilation: | no |
Language: | en-US |
Citation: | MetabolomicsBasics citation info |
Materials: | README |
In views: | Omics |
CRAN checks: | MetabolomicsBasics results |
Reference manual: | MetabolomicsBasics.pdf |
Package source: | MetabolomicsBasics_1.4.5.tar.gz |
Windows binaries: | r-devel: MetabolomicsBasics_1.4.5.zip, r-release: MetabolomicsBasics_1.4.5.zip, r-oldrel: MetabolomicsBasics_1.4.5.zip |
macOS binaries: | r-release (arm64): MetabolomicsBasics_1.4.5.tgz, r-oldrel (arm64): MetabolomicsBasics_1.4.5.tgz, r-release (x86_64): MetabolomicsBasics_1.4.5.tgz, r-oldrel (x86_64): MetabolomicsBasics_1.4.5.tgz |
Old sources: | MetabolomicsBasics archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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