The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

MMD: Minimal Multilocus Distance (MMD) for Source Attribution and Loci Selection

The aim of the package is two-fold: (i) To implement the MMD method for attribution of individuals to sources using the Hamming distance between multilocus genotypes. (ii) To select informative genetic markers based on information theory concepts (entropy, mutual information and redundancy). The package implements the functions introduced by Perez-Reche, F. J., Rotariu, O., Lopes, B. S., Forbes, K. J. and Strachan, N. J. C. Mining whole genome sequence data to efficiently attribute individuals to source populations. Scientific Reports 10, 12124 (2020) <doi:10.1038/s41598-020-68740-6>. See more details and examples in the README file.

Version: 1.0.0
Imports: e1071, plyr, bigmemory
Suggests: knitr, rmarkdown
Published: 2021-01-26
DOI: 10.32614/CRAN.package.MMD
Author: Francisco Perez-Reche [aut, cre]
Maintainer: Francisco Perez-Reche <fperez-reche at abdn.ac.uk>
License: GPL-3
NeedsCompilation: no
CRAN checks: MMD results

Documentation:

Reference manual: MMD.pdf
Vignettes: Tutorial for the R MMD package

Downloads:

Package source: MMD_1.0.0.tar.gz
Windows binaries: r-devel: MMD_1.0.0.zip, r-release: MMD_1.0.0.zip, r-oldrel: MMD_1.0.0.zip
macOS binaries: r-release (arm64): MMD_1.0.0.tgz, r-oldrel (arm64): MMD_1.0.0.tgz, r-release (x86_64): MMD_1.0.0.tgz, r-oldrel (x86_64): MMD_1.0.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=MMD to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.