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A collection of tools for the calculation of freewater metabolism from in situ time series of dissolved oxygen, water temperature, and, optionally, additional environmental variables. LakeMetabolizer implements 5 different metabolism models with diverse statistical underpinnings: bookkeeping, ordinary least squares, maximum likelihood, Kalman filter, and Bayesian. Each of these 5 metabolism models can be combined with 1 of 7 models for computing the coefficient of gas exchange across the air–water interface (k). LakeMetabolizer also features a variety of supporting functions that compute conversions and implement calculations commonly applied to raw data prior to estimating metabolism (e.g., oxygen saturation and optical conversion models).
Version: | 1.5.5 |
Depends: | R (≥ 2.15.0), rLakeAnalyzer (≥ 1.4) |
Imports: | plyr, methods |
Suggests: | R2jags, testthat |
Published: | 2022-11-15 |
DOI: | 10.32614/CRAN.package.LakeMetabolizer |
Author: | Luke Winslow [aut],
Jake Zwart |
Maintainer: | Jake Zwart <jayzlimno at gmail.com> |
BugReports: | https://github.com/GLEON/LakeMetabolizer/issues |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
URL: | https://www.tandfonline.com/doi/abs/10.1080/IW-6.4.883 |
NeedsCompilation: | yes |
Citation: | LakeMetabolizer citation info |
Materials: | NEWS |
CRAN checks: | LakeMetabolizer results |
Reference manual: | LakeMetabolizer.pdf |
Package source: | LakeMetabolizer_1.5.5.tar.gz |
Windows binaries: | r-devel: LakeMetabolizer_1.5.5.zip, r-release: LakeMetabolizer_1.5.5.zip, r-oldrel: LakeMetabolizer_1.5.5.zip |
macOS binaries: | r-release (arm64): LakeMetabolizer_1.5.5.tgz, r-oldrel (arm64): LakeMetabolizer_1.5.5.tgz, r-release (x86_64): LakeMetabolizer_1.5.5.tgz, r-oldrel (x86_64): LakeMetabolizer_1.5.5.tgz |
Old sources: | LakeMetabolizer archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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