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IDSL.CSA: Composite Spectra Analysis (CSA) for High-Resolution Mass Spectrometry Analyses

A fragmentation spectra detection pipeline for high-throughput LC/HRMS data processing using peaklists generated by the 'IDSL.IPA' workflow <doi:10.1021/acs.jproteome.2c00120>. The 'IDSL.CSA' package can deconvolute fragmentation spectra from Composite Spectra Analysis (CSA), Data Dependent Acquisition (DDA) analysis, and various Data-Independent Acquisition (DIA) methods such as MS^E, All-Ion Fragmentation (AIF) and SWATH-MS analysis. The 'IDSL.CSA' package was introduced in <doi:10.1021/acs.analchem.3c00376>.

Version: 1.2
Depends: R (≥ 4.0)
Imports: IDSL.MXP, IDSL.IPA, IDSL.FSA, readxl
Published: 2023-06-29
DOI: 10.32614/CRAN.package.IDSL.CSA
Author: Sadjad Fakouri-Baygi ORCID iD [aut], Dinesh Barupal ORCID iD [cre, aut]
Maintainer: Dinesh Barupal <dinesh.barupal at mssm.edu>
BugReports: https://github.com/idslme/idsl.csa/issues
License: MIT + file LICENSE
URL: https://github.com/idslme/idsl.csa
NeedsCompilation: no
Citation: IDSL.CSA citation info
CRAN checks: IDSL.CSA results

Documentation:

Reference manual: IDSL.CSA.pdf

Downloads:

Package source: IDSL.CSA_1.2.tar.gz
Windows binaries: r-devel: IDSL.CSA_1.2.zip, r-release: IDSL.CSA_1.2.zip, r-oldrel: IDSL.CSA_1.2.zip
macOS binaries: r-release (arm64): IDSL.CSA_1.2.tgz, r-oldrel (arm64): IDSL.CSA_1.2.tgz, r-release (x86_64): IDSL.CSA_1.2.tgz, r-oldrel (x86_64): IDSL.CSA_1.2.tgz
Old sources: IDSL.CSA archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=IDSL.CSA to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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