The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).
| Version: | 1.4.1 |
| Depends: | R (≥ 3.4.0) |
| Imports: | igraph (≥ 1.1.2), ape (≥ 4.1), magrittr (≥ 1.5), stringr (≥ 1.2.0), plyr (≥ 1.8.4), dplyr (≥ 0.7.4), tidyr (≥ 0.7.2), ggplot2 (≥ 2.2.1), vegan (≥ 2.4.0), DESeq2 (≥ 1.16.1), phyloseq (≥ 1.20.0), coenocliner (≥ 0.2.2), lazyeval (≥ 0.2.0) |
| Suggests: | testthat, knitr, rmarkdown, doParallel |
| Published: | 2019-09-13 |
| Author: | Nicholas Youngblut [aut], Samuel Barnett [cre, ctb] |
| Maintainer: | Samuel Barnett <seb369 at cornell.edu> |
| License: | GPL-2 | file LICENSE |
| NeedsCompilation: | no |
| Citation: | HTSSIP citation info |
| Materials: | README NEWS |
| CRAN checks: | HTSSIP results |
| Reference manual: | HTSSIP.pdf |
| Vignettes: |
BD shifts HTSSIP introduction HTS-SIP data simulation MW-HR-SIP Beta diversity ordinations heavy-SIP q-SIP Quantifying isotope incorporation |
| Package source: | HTSSIP_1.4.1.tar.gz |
| Windows binaries: | r-devel: HTSSIP_1.4.1.zip, r-release: HTSSIP_1.4.1.zip, r-oldrel: HTSSIP_1.4.1.zip |
| macOS binaries: | r-release (arm64): HTSSIP_1.4.1.tgz, r-oldrel (arm64): HTSSIP_1.4.1.tgz, r-release (x86_64): HTSSIP_1.4.1.tgz, r-oldrel (x86_64): HTSSIP_1.4.1.tgz |
| Old sources: | HTSSIP archive |
| Reverse imports: | SIPmg |
Please use the canonical form https://CRAN.R-project.org/package=HTSSIP to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.