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DrImpute: Imputing Dropout Events in Single-Cell RNA-Sequencing Data

R codes for imputing dropout events. Many statistical methods in cell type identification, visualization and lineage reconstruction do not account for dropout events ('PCAreduce', 'SC3', 'PCA', 't-SNE', 'Monocle', 'TSCAN', etc). 'DrImpute' can improve the performance of such software by imputing dropout events.

Version: 1.0
Depends: R (≥ 3.1.0)
Imports: Rcpp
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, devtools, roxygen2, irlba
Published: 2017-07-15
DOI: 10.32614/CRAN.package.DrImpute
Author: Il-Youp Kwak with contributions from Wuming Gong
Maintainer: Il-Youp Kwak <ilyoup.kwak at gmail.com>
License: GPL-3
URL: https://github.com/ikwak2/DrImpute
NeedsCompilation: yes
Materials: README
In views: MissingData
CRAN checks: DrImpute results

Documentation:

Reference manual: DrImpute.pdf
Vignettes: DrImpute : imputing dropout events in single-cell RNA-sequencing data

Downloads:

Package source: DrImpute_1.0.tar.gz
Windows binaries: r-devel: DrImpute_1.0.zip, r-release: DrImpute_1.0.zip, r-oldrel: DrImpute_1.0.zip
macOS binaries: r-release (arm64): DrImpute_1.0.tgz, r-oldrel (arm64): DrImpute_1.0.tgz, r-release (x86_64): DrImpute_1.0.tgz, r-oldrel (x86_64): DrImpute_1.0.tgz

Reverse dependencies:

Reverse imports: ADImpute

Linking:

Please use the canonical form https://CRAN.R-project.org/package=DrImpute to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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