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R codes for imputing dropout events. Many statistical methods in cell type identification, visualization and lineage reconstruction do not account for dropout events ('PCAreduce', 'SC3', 'PCA', 't-SNE', 'Monocle', 'TSCAN', etc). 'DrImpute' can improve the performance of such software by imputing dropout events.
| Version: | 1.0 |
| Depends: | R (≥ 3.1.0) |
| Imports: | Rcpp |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, rmarkdown, devtools, roxygen2, irlba |
| Published: | 2017-07-15 |
| Author: | Il-Youp Kwak with contributions from Wuming Gong |
| Maintainer: | Il-Youp Kwak <ilyoup.kwak at gmail.com> |
| License: | GPL-3 |
| URL: | https://github.com/ikwak2/DrImpute |
| NeedsCompilation: | yes |
| Materials: | README |
| In views: | MissingData |
| CRAN checks: | DrImpute results |
| Reference manual: | DrImpute.pdf |
| Vignettes: |
DrImpute : imputing dropout events in single-cell RNA-sequencing data |
| Package source: | DrImpute_1.0.tar.gz |
| Windows binaries: | r-devel: DrImpute_1.0.zip, r-release: DrImpute_1.0.zip, r-oldrel: DrImpute_1.0.zip |
| macOS binaries: | r-release (arm64): DrImpute_1.0.tgz, r-oldrel (arm64): DrImpute_1.0.tgz, r-release (x86_64): DrImpute_1.0.tgz, r-oldrel (x86_64): DrImpute_1.0.tgz |
| Reverse imports: | ADImpute |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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