The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Designed for genomic and proteomic data analysis, enabling unbiased PubMed searching, protein interaction network visualization, and comprehensive data summarization. This package aims to help users identify novel targets within their data sets based on protein network interactions and publication precedence of target's association with research context based on literature precedence. Methods in this package are described in detail in: Douglas (Year) <to-be-added DOI or link to the preprint>. Key functionalities of this package also leverage methodologies from previous works, such as: - Szklarczyk et al. (2023) <doi:10.1093/nar/gkac1000> - Winter (2017) <doi:10.32614/RJ-2017-066>.
Version: | 1.0.0 |
Depends: | R (≥ 4.0.0) |
Imports: | rentrez, ComplexHeatmap, circlize, STRINGdb, data.table, igraph, ggplot2, openxlsx, dplyr, tidyr, magrittr, tibble, ggrepel |
Suggests: | testthat (≥ 3.0.0), knitr, rmarkdown, withr |
Published: | 2025-04-29 |
DOI: | 10.32614/CRAN.package.DeSciDe |
Author: | Cameron Douglas |
Maintainer: | Cameron Douglas <camerondouglas at ufl.edu> |
BugReports: | https://github.com/camdouglas/DeSciDe/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/camdouglas/DeSciDe |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | DeSciDe results |
Reference manual: | DeSciDe.pdf |
Vignettes: |
DeSciDe Vignette (source, R code) |
Package source: | DeSciDe_1.0.0.tar.gz |
Windows binaries: | r-devel: not available, r-release: DeSciDe_1.0.0.zip, r-oldrel: not available |
macOS binaries: | r-release (arm64): DeSciDe_1.0.0.tgz, r-oldrel (arm64): DeSciDe_1.0.0.tgz, r-release (x86_64): DeSciDe_1.0.0.tgz, r-oldrel (x86_64): DeSciDe_1.0.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=DeSciDe to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.