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A simple R wrapper for the Java BiBit algorithm from "A biclustering algorithm for extracting bit-patterns from binary datasets" from Domingo et al. (2011) <doi:10.1093/bioinformatics/btr464>. An simple adaption for the BiBit algorithm which allows noise in the biclusters is also introduced as well as a function to guide the algorithm towards given (sub)patterns. Further, a workflow to derive noisy biclusters from discoverd larger column patterns is included as well.
| Version: | 0.3.1 |
| Imports: | stats, foreign, methods, utils, viridis, cluster, dendextend, lattice, grDevices, graphics, randomcoloR, biclust |
| Published: | 2017-06-30 |
| DOI: | 10.32614/CRAN.package.BiBitR |
| Author: | De Troyer Ewoud |
| Maintainer: | De Troyer Ewoud <ewoud.detroyer at uhasselt.be> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| SystemRequirements: | Java |
| Materials: | README |
| CRAN checks: | BiBitR results |
| Reference manual: | BiBitR.pdf |
| Package source: | BiBitR_0.3.1.tar.gz |
| Windows binaries: | r-devel: BiBitR_0.3.1.zip, r-release: BiBitR_0.3.1.zip, r-oldrel: BiBitR_0.3.1.zip |
| macOS binaries: | r-release (arm64): BiBitR_0.3.1.tgz, r-oldrel (arm64): BiBitR_0.3.1.tgz, r-release (x86_64): BiBitR_0.3.1.tgz, r-oldrel (x86_64): BiBitR_0.3.1.tgz |
| Old sources: | BiBitR archive |
| Reverse depends: | RcmdrPlugin.BiclustGUI |
| Reverse imports: | miRSM |
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