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biclust: BiCluster Algorithms

The main function biclust() provides several algorithms to find biclusters in two-dimensional data: Cheng and Church (2000, ISBN:1-57735-115-0), spectral (2003) <doi:10.1101/gr.648603>, plaid model (2005) <doi:10.1016/j.csda.2004.02.003>, xmotifs (2003) <doi:10.1142/9789812776303_0008> and bimax (2006) <doi:10.1093/bioinformatics/btl060>. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.

Version: 2.0.3.1
Depends: R (≥ 2.10), MASS, grid, colorspace, lattice
Imports: methods, flexclust, additivityTests, tidyr, ggplot2
Suggests: isa2
Published: 2023-05-19
DOI: 10.32614/CRAN.package.biclust
Author: Sebastian Kaiser, Rodrigo Santamaria, Tatsiana Khamiakova, Martin Sill, Roberto Theron, Luis Quintales, Friedrich Leisch, Ewoud De Troyer and Sami Leon.
Maintainer: Sebastian Kaiser <dr.sebastian.kaiser at gmail.com>
License: GPL-3
NeedsCompilation: yes
Materials: NEWS
In views: Cluster
CRAN checks: biclust results

Documentation:

Reference manual: biclust.pdf

Downloads:

Package source: biclust_2.0.3.1.tar.gz
Windows binaries: r-devel: biclust_2.0.3.1.zip, r-release: biclust_2.0.3.1.zip, r-oldrel: biclust_2.0.3.1.zip
macOS binaries: r-release (arm64): biclust_2.0.3.1.tgz, r-oldrel (arm64): biclust_2.0.3.1.tgz, r-release (x86_64): biclust_2.0.3.1.tgz, r-oldrel (x86_64): biclust_2.0.3.1.tgz
Old sources: biclust archive

Reverse dependencies:

Reverse depends: iBBiG, QUBIC, RcmdrPlugin.BiclustGUI, runibic, s4vd, superbiclust
Reverse imports: Anthropometry, BiBitR, biclustermd, FunCC, miRSM, mosbi, rqubic, sigQC
Reverse suggests: BcDiag, isa2, rattle

Linking:

Please use the canonical form https://CRAN.R-project.org/package=biclust to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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