The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
AlphaSimR: Breeding Program Simulations
The successor to the 'AlphaSim' software for breeding program
simulation [Faux et al. (2016) <doi:10.3835/plantgenome2016.02.0013>].
Used for stochastic simulations of breeding programs to the level of DNA
sequence for every individual. Contained is a wide range of functions for
modeling common tasks in a breeding program, such as selection and crossing.
These functions allow for constructing simulations of highly complex plant and
animal breeding programs via scripting in the R software environment. Such
simulations can be used to evaluate overall breeding program performance and
conduct research into breeding program design, such as implementation of
genomic selection. Included is the 'Markovian Coalescent Simulator' ('MaCS')
for fast simulation of biallelic sequences according to a population
demographic history [Chen et al. (2009) <doi:10.1101/gr.083634.108>].
| Version: |
1.6.1 |
| Depends: |
R (≥ 4.0.0), methods, R6 |
| Imports: |
Rcpp (≥ 0.12.7), Rdpack |
| LinkingTo: |
Rcpp, RcppArmadillo (≥ 0.7.500.0.0), BH |
| Suggests: |
knitr, rmarkdown, testthat |
| Published: |
2024-11-01 |
| DOI: |
10.32614/CRAN.package.AlphaSimR |
| Author: |
Chris Gaynor 
[aut, cre],
Gregor Gorjanc
[ctb],
John Hickey [ctb],
Daniel Money
[ctb],
David Wilson [ctb],
Thiago Oliveira
[ctb],
Audrey Martin
[ctb],
Philip Greenspoon
[ctb] |
| Maintainer: |
Chris Gaynor <gaynor.robert at hotmail.com> |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/gaynorr/AlphaSimR,
https://gaynorr.github.io/AlphaSimR/,
https://www.edx.org/learn/animal-breeding/the-university-of-edinburgh-breeding-programme-modelling-with-alphasimr |
| NeedsCompilation: |
yes |
| Citation: |
AlphaSimR citation info |
| Materials: |
README NEWS |
| In views: |
Agriculture |
| CRAN checks: |
AlphaSimR results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=AlphaSimR
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.