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AMR: Antimicrobial Resistance Data Analysis

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in <doi:10.18637/jss.v104.i03>.

Version: 3.0.0
Depends: R (≥ 3.0.0)
Suggests: cleaner, cli, crayon, curl, data.table, dplyr, ggplot2, knitr, openxlsx, parallelly, pillar, progress, readxl, rmarkdown, rstudioapi, rvest, skimr, testthat, tibble, tidymodels, tidyselect, tinytest, vctrs, xml2
Published: 2025-06-02
DOI: 10.32614/CRAN.package.AMR
Author: Matthijs S. Berends ORCID iD [aut, cre], Dennis Souverein ORCID iD [aut, ctb], Erwin E. A. Hassing [aut, ctb], Aislinn Cook ORCID iD [ctb], Andrew P. Norgan ORCID iD [ctb], Anita Williams ORCID iD [ctb], Annick Lenglet ORCID iD [ctb], Anthony Underwood ORCID iD [ctb], Anton Mymrikov [ctb], Bart C. Meijer [ctb], Christian F. Luz ORCID iD [ctb], Dmytro Mykhailenko [ctb], Eric H. L. C. M. Hazenberg [ctb], Gwen Knight ORCID iD [ctb], Jane Hawkey ORCID iD [ctb], Jason Stull ORCID iD [ctb], Javier Sanchez ORCID iD [ctb], Jonas Salm [ctb], Judith M. Fonville [ctb], Kathryn Holt ORCID iD [ctb], Larisse Bolton ORCID iD [ctb], Matthew Saab [ctb], Natacha Couto ORCID iD [ctb], Peter Dutey-Magni ORCID iD [ctb], Rogier P. Schade [ctb], Sofia Ny ORCID iD [ctb], Alex W. Friedrich ORCID iD [ths], Bhanu N. M. Sinha ORCID iD [ths], Casper J. Albers ORCID iD [ths], Corinna Glasner ORCID iD [ths]
Maintainer: Matthijs S. Berends <m.s.berends at umcg.nl>
BugReports: https://github.com/msberends/AMR/issues
License: GPL-2 | file LICENSE
URL: https://amr-for-r.org, https://github.com/msberends/AMR
NeedsCompilation: no
Citation: AMR citation info
Materials: README NEWS
In views: Epidemiology
CRAN checks: AMR results

Documentation:

Reference manual: AMR.pdf
Vignettes: AMR for Python (source, R code)
Welcome to the 'AMR' package (source, R code)

Downloads:

Package source: AMR_3.0.0.tar.gz
Windows binaries: r-devel: AMR_3.0.0.zip, r-release: AMR_3.0.0.zip, r-oldrel: AMR_3.0.0.zip
macOS binaries: r-release (arm64): AMR_3.0.0.tgz, r-oldrel (arm64): AMR_3.0.0.tgz, r-release (x86_64): AMR_3.0.0.tgz, r-oldrel (x86_64): AMR_3.0.0.tgz
Old sources: AMR archive

Reverse dependencies:

Reverse imports: MIC, MIMER

Linking:

Please use the canonical form https://CRAN.R-project.org/package=AMR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.