AMISforInfectiousDiseases: Implement the AMIS Algorithm for Infectious Disease Models

Implements the Adaptive Multiple Importance Sampling (AMIS) algorithm, as described by Retkute et al. (2021, <doi:10.1214/21-AOAS1486>), to estimate key epidemiological parameters by combining outputs from a geostatistical model of infectious diseases (such as prevalence, incidence, or relative risk) with a disease transmission model. Utilising the resulting posterior distributions, the package enables forward projections at the local level.

Version:	0.1.0
Depends:	R (≥ 4.1)
Imports:	Hmisc, mclust, mnormt, Rcpp, weights
LinkingTo:	Rcpp, RcppArmadillo
Suggests:	knitr, ggplot2, patchwork, rmarkdown, sf, viridis
Published:	2025-01-20
DOI:	10.32614/CRAN.package.AMISforInfectiousDiseases
Author:	Evandro Konzen [aut], Renata Retkute [aut], Raiha Browning [aut], Thilbault Lestang [aut], Simon Spencer [aut, cre], University of Warwick [cph], Oxford Research Software Engineering [cph]
Maintainer:	Simon Spencer <s.e.f.spencer at warwick.ac.uk>
BugReports:	https://github.com/drsimonspencer/AMISforInfectiousDiseases-dev/issues
License:	MIT + file LICENSE
URL:	https://github.com/drsimonspencer/AMISforInfectiousDiseases-dev
NeedsCompilation:	yes
Materials:	README
CRAN checks:	AMISforInfectiousDiseases results

Documentation:

Reference manual:	AMISforInfectiousDiseases.pdf
Vignettes:	Fitting Ascariasis data (source) Simulation study (source)

Downloads:

Package source:	AMISforInfectiousDiseases_0.1.0.tar.gz
Windows binaries:	r-devel: AMISforInfectiousDiseases_0.1.0.zip, r-release: AMISforInfectiousDiseases_0.1.0.zip, r-oldrel: not available
macOS binaries:	r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): AMISforInfectiousDiseases_0.1.0.tgz, r-oldrel (x86_64): not available

Linking:

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