CRAN Package Check Results for Maintainer ‘Zhian N. Kamvar <zkamvar at gmail.com>’

Last updated on 2024-08-16 21:49:40 CEST.

Package	WARN	NOTE	OK
adegenet		5	8
apyramid			13
aweek			13
epikit		13
ezec			13
matchmaker		13
poppr	1	3	9
tinkr		10	3

Package adegenet

Current CRAN status: NOTE: 5, OK: 8

Version: 2.1.10
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: df2genind.Rd: hierarchy pairDist.Rd: dist.dna strata-methods.Rd: hierarchy Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 2.1.10
Check: installed package size
Result: NOTE installed size is 5.8Mb sub-directories of 1Mb or more: R 2.0Mb data 1.3Mb files 1.7Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 2.1.10
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'adespatial', 'hierfstat', 'spdep', 'poppr' Flavor: r-oldrel-macos-x86_64

Version: 2.1.10
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘spdep’ Flavor: r-oldrel-macos-x86_64

Package apyramid

Current CRAN status: OK: 13

Package aweek

Current CRAN status: OK: 13

Package epikit

Current CRAN status: NOTE: 13

Version: 0.1.6
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘epidict’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package ezec

Current CRAN status: OK: 13

Package matchmaker

Current CRAN status: NOTE: 13

Version: 0.1.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package poppr

Current CRAN status: WARN: 1, NOTE: 3, OK: 9

Version: 2.9.6
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: MLG-accessors.Rd: genlight-class aboot.Rd: genind, genpop, genlight-class bitwise.dist.Rd: genlight-class, genind-class bitwise.ia.Rd: genlight-class bootgen-class.Rd: gen-class bruvo.boot.Rd: genind, boot.phylo, nancycats, nj, nodelabels, tab bruvo.dist.Rd: genind bruvo.msn.Rd: genind, nancycats bruvomat-methods.Rd: genind-class clonecorrect.Rd: genind-class coercion-methods.Rd: genind-class, splitStrata diss.dist.Rd: genind diversity_ci.Rd: genind filter_stats.Rd: genind, genlight fix_replen.Rd: genind genclone-class.Rd: genind-class, genlight-class genclone-method.Rd: genind-class genetic_distance.Rd: genind-class, dist.genpop genind2genalex.Rd: genind-class genotype_curve.Rd: genind-class ia.Rd: import2genind info_table.Rd: genind-class informloci.Rd: genind-class is.clone.Rd: genind-class, genlight-class missingno.Rd: genind-class, tab mlg.Rd: ggplot mlg.filter.Rd: genind-class pgen.Rd: strata plot_poppr_msn.Rd: genind-class, genlight-class poppr-package.Rd: genind-class, genlight-class poppr.Rd: tab, strata, last_plot poppr.amova.Rd: genind-class, genlight-class, strata, quasieuclid, lingoes, cailliez poppr.msn.Rd: genind, genlight, nancycats, nj, nodelabels, tab popsub.Rd: genind-class, genlight-class psex.Rd: strata read.genalex.Rd: genind, other, genind-class recode_polyploids.Rd: genind-class, genpop-class rraf.Rd: strata shufflepop.Rd: genind-class snpclone-coercion-methods.Rd: genlight-class snpclone-method.Rd: genlight-class test_replen.Rd: genind upgma.Rd: as.phylo win.ia.Rd: genlight-class Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 2.9.6
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘algo.Rnw’ using knitr Error: processing vignette 'algo.Rnw' failed with diagnostics: Running 'texi2dvi' on 'algo.tex' failed. LaTeX errors: ! Undefined control sequence. l.548 \hlkwd{library}\hldef {(}\hlsng{"poppr"}\hldef{)} ? ! Emergency stop. ! Emergency stop. l.548 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘algo.Rnw’ SUMMARY: processing the following file failed: ‘algo.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Package tinkr

Current CRAN status: NOTE: 10, OK: 3

Version: 0.2.0
Check: Rd files
Result: NOTE checkRd: (-1) add_md.Rd:10: Lost braces; missing escapes or markup? 10 | \item{body}{an XML object generated via {tinkr}} | ^ checkRd: (-1) md_ns.Rd:13: Lost braces; missing escapes or markup? 13 | The {commonmark} package is used to translate markdown to XML, but it does | ^ checkRd: (-1) md_ns.Rd:14: Lost braces; missing escapes or markup? 14 | not assign a namespace prefix, which means that {xml2} will auto-assign a | ^ checkRd: (-1) stylesheet.Rd:5: Lost braces; missing escapes or markup? 5 | \title{The {tinkr} stylesheet} | ^ checkRd: (-1) stylesheet.Rd:14: Lost braces; missing escapes or markup? 14 | This function returns the path to the {tinkr} stylesheet | ^ checkRd: (-1) stylesheet.Rd:11: Lost braces; missing escapes or markup? 11 | stylesheet used by {tinkr}. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64