CRAN Package Check Results for Maintainer ‘Xiao Zhang <zhangxiao1994 at cuhk.edu.cn>’

Last updated on 2025-05-15 09:53:14 CEST.

Package	ERROR	NOTE	OK
CAESAR.Suite	1	2	10

Package CAESAR.Suite

Current CRAN status: ERROR: 1, NOTE: 2, OK: 10

Additional issues

ATLAS M1mac

Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'STMOB.Rmd' using rmarkdown trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/MOB_ST.rda?raw=true' Content type 'application/octet-stream' length 5988380 bytes (5.7 MB) ================================================== downloaded 5.7 MB trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/MOB_scRNA.rda?raw=true' Content type 'application/octet-stream' length 48066404 bytes (45.8 MB) ================================================== downloaded 45.8 MB Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| --- finished re-building 'STMOB.Rmd' --- re-building 'XeniumBC.Rmd' using rmarkdown trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_scRNAList.rda?raw=true' Content type 'application/octet-stream' length 2310272 bytes (2.2 MB) ================================================== downloaded 2.2 MB trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_XeniumList.rda?raw=true' Content type 'application/octet-stream' length 1256437 bytes (1.2 MB) ================================================== downloaded 1.2 MB trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_feature_imgList.rda?raw=true' Content type 'application/octet-stream' length 12559173 bytes (12.0 MB) ================================================== downloaded 12.0 MB Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/pathway4BC.rda?raw=true' Quitting from XeniumBC.Rmd:311-331 [unnamed-chunk-18] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `download.file()`: ! cannot open URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/pathway4BC.rda?raw=true' --- Backtrace: ▆ 1. └─utils::download.file(githubURL, pathway4BC_file, mode = "wb") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'XeniumBC.Rmd' failed with diagnostics: cannot open URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/pathway4BC.rda?raw=true' --- failed re-building 'XeniumBC.Rmd' SUMMARY: processing the following file failed: 'XeniumBC.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

Version: 0.2.2
Check: installed package size
Result: NOTE installed size is 8.4Mb sub-directories of 1Mb or more: data 1.4Mb doc 1.2Mb libs 5.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64