CRAN Package Check Results for Package zenplots

Last updated on 2025-02-23 15:50:02 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.6	10.73	131.99	142.72	NOTE
r-devel-linux-x86_64-debian-gcc	1.0.6	8.24	74.54	82.78	ERROR
r-devel-linux-x86_64-fedora-clang	1.0.6			223.67	OK
r-devel-linux-x86_64-fedora-gcc	1.0.6			233.66	OK
r-devel-macos-arm64	1.0.6			93.00	OK
r-devel-macos-x86_64	1.0.6			136.00	OK
r-devel-windows-x86_64	1.0.6	13.00	159.00	172.00	NOTE
r-patched-linux-x86_64	1.0.6	18.04	123.57	141.61	OK
r-release-linux-x86_64	1.0.6	10.99	123.40	134.39	OK
r-release-macos-arm64	1.0.6			85.00	OK
r-release-macos-x86_64	1.0.6			107.00	OK
r-release-windows-x86_64	1.0.6	14.00	150.00	164.00	OK
r-oldrel-macos-arm64	1.0.6			69.00	OK
r-oldrel-macos-x86_64	1.0.6			200.00	OK
r-oldrel-windows-x86_64	1.0.6	16.00	177.00	193.00	OK

Additional issues

noSuggests

Check Details

Version: 1.0.6
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: graph_pairs.Rd: graphNEL Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.0.6
Check: for unstated dependencies in ‘demo’
Result: NOTE 'library' or 'require' calls not declared from: ‘crop’ ‘mvtnorm’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.6
Check: examples
Result: ERROR Running examples in ‘zenplots-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: graph_pairs > ### Title: Turn pairs or paths into a graph > ### Aliases: graph_pairs > > ### ** Examples > > ## To display the graphs constructed the packages > ## graph and Rgraphviz packages need to be loaded > library(graph) Loading required package: BiocGenerics Loading required package: generics Attaching package: ‘generics’ The following objects are masked from ‘package:base’: as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal, union Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table, tapply, unique, unsplit, which.max, which.min > library(Rgraphviz) Error in library(Rgraphviz) : there is no package called ‘Rgraphviz’ Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.6
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘intro.Rmd’ using rmarkdown Quitting from lines 98-102 [unnamed-chunk-7] (intro.Rmd) Error: processing vignette 'intro.Rmd' failed with diagnostics: there is no package called 'Rgraphviz' --- failed re-building ‘intro.Rmd’ --- re-building ‘selected_features.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-2-1.png 576x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 43726 bytes Input file size = 44644 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41670 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 41365 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 41008 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 41008 Output IDAT size = 41008 bytes (2718 bytes decrease) Output file size = 41086 bytes (3558 bytes = 7.97% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-3-1.png 576x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10399 bytes Input file size = 11269 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9094 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9094 Output IDAT size = 9094 bytes (1305 bytes decrease) Output file size = 9172 bytes (2097 bytes = 18.61% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-7-1.png 768x1276 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 20322 bytes Input file size = 21204 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18364 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18364 Output IDAT size = 18364 bytes (1958 bytes decrease) Output file size = 18442 bytes (2762 bytes = 13.03% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-8-1.png 768x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 17673 bytes Input file size = 18555 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15985 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15985 Output IDAT size = 15985 bytes (1688 bytes decrease) Output file size = 16063 bytes (2492 bytes = 13.43% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-9-1.png 768x633 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 17300 bytes Input file size = 18182 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15548 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15548 Output IDAT size = 15548 bytes (1752 bytes decrease) Output file size = 15626 bytes (2556 bytes = 14.06% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-10-1.png 768x518 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12859 bytes Input file size = 13726 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11635 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11635 Output IDAT size = 11635 bytes (1224 bytes decrease) Output file size = 11713 bytes (2013 bytes = 14.67% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-11-1.png 576x960 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10034 bytes Input file size = 10895 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8677 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8677 Output IDAT size = 8677 bytes (1357 bytes decrease) Output file size = 8755 bytes (2140 bytes = 19.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-12-1.png 576x672 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9332 bytes Input file size = 10202 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7750 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7750 Output IDAT size = 7750 bytes (1582 bytes decrease) Output file size = 7828 bytes (2374 bytes = 23.27% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-20-1.png 576x864 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 104172 bytes Input file size = 105174 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 100235 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 100150 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 100150 Output IDAT size = 100150 bytes (4022 bytes decrease) Output file size = 100228 bytes (4946 bytes = 4.70% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-23-1.png 576x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 66445 bytes Input file size = 67399 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63860 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63860 Output IDAT size = 63860 bytes (2585 bytes decrease) Output file size = 63938 bytes (3461 bytes = 5.14% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zenplots.Rcheck/vign_test/zenplots/vignettes/selected_features_files/figure-html/unnamed-chunk-24-1.png 576x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 29362 bytes Input file size = 30256 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27518 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27518 Output IDAT size = 27518 bytes (1844 bytes decrease) Output file size = 27596 bytes (2660 bytes = 8.79% decrease) Quitting from lines 249-252 [unnamed-chunk-28] (selected_features.Rmd) Error: processing vignette 'selected_features.Rmd' failed with diagnostics: there is no package called 'Rgraphviz' --- failed re-building ‘selected_features.Rmd’ SUMMARY: processing the following files failed: ‘intro.Rmd’ ‘selected_features.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc