CRAN Package Check Results for Maintainer ‘Zacharias Steinmetz <z.steinmetz at rptu.de>’

Last updated on 2025-12-28 01:49:23 CET.

Package	ERROR	OK
envalysis	1	12

Package envalysis

Current CRAN status: ERROR: 1, OK: 12

Version: 0.7.0
Check: tests
Result: ERROR Running 'testthat.R' [11s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(envalysis) > > test_check("envalysis") Attaching package: 'data.table' The following object is masked from 'package:base': %notin% number of blank values <= 1; LOD is estimated from the calibration curve number of blank values <= 1; LOD is estimated from the calibration curve number of blank values <= 1; LOD is estimated from the calibration curve Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, : f() values at end points not of opposite sign Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, : f() values at end points not of opposite sign Saving _problems/test-calibration-159.R Loading required package: MASS 'drc' has been loaded. Please cite R and 'drc' if used for a publication, for references type 'citation()' and 'citation('drc')'. Attaching package: 'drc' The following objects are masked from 'package:stats': gaussian, getInitial [ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • On CRAN (3): 'test-calibration.R:81:1', 'test-texture.R:62:1', 'test-weight_select.R:13:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-calibration.R:154:3'): batch calibration works as expected ───── Error in ``[.data.table`(dt$seq, , `:=`(`Calc Conc`, inv_predict(calibration(Area ~ `Spec Conc`, .SD[Type == "Standard"]), Area, below_lod = 0)), by = .(Compound, Batch))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-calibration.R:154:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. ├─testthat::expect_warning(...) 8. │ └─testthat:::expect_condition_matching_(...) 9. │ └─testthat:::quasi_capture(...) 10. │ ├─testthat (local) .capture(...) 11. │ │ └─base::withCallingHandlers(...) 12. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 13. ├─testthat::expect_warning(...) 14. │ └─testthat:::expect_condition_matching_(...) 15. │ └─testthat:::quasi_capture(...) 16. │ ├─testthat (local) .capture(...) 17. │ │ └─base::withCallingHandlers(...) 18. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 19. ├─testthat::expect_warning(...) 20. │ └─testthat:::expect_condition_matching_(...) 21. │ └─testthat:::quasi_capture(...) 22. │ ├─testthat (local) .capture(...) 23. │ │ └─base::withCallingHandlers(...) 24. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 25. ├─testthat::expect_warning(...) 26. │ └─testthat:::expect_condition_matching_(...) 27. │ └─testthat:::quasi_capture(...) 28. │ ├─testthat (local) .capture(...) 29. │ │ └─base::withCallingHandlers(...) 30. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 31. ├─testthat::expect_warning(...) 32. │ └─testthat:::expect_condition_matching_(...) 33. │ └─testthat:::quasi_capture(...) 34. │ ├─testthat (local) .capture(...) 35. │ │ └─base::withCallingHandlers(...) 36. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 37. ├─...[] 38. └─data.table:::`[.data.table`(...) [ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 0.7.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'calibration.Rmd' using rmarkdown Quitting from calibration.Rmd:122-127 [calibration] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 6/6 in VECTOR_ELT --- Backtrace: ▆ 1. ├─...[] 2. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'calibration.Rmd' failed with diagnostics: attempt access index 6/6 in VECTOR_ELT --- failed re-building 'calibration.Rmd' --- re-building 'texture.Rmd' using rmarkdown --- finished re-building 'texture.Rmd' --- re-building 'theme_publish.Rmd' using rmarkdown Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : font family not found in Windows font database --- finished re-building 'theme_publish.Rmd' SUMMARY: processing the following file failed: 'calibration.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64