Last updated on 2025-12-28 01:48:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.0 | 12.08 | 133.79 | 145.87 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.0 | 8.50 | 100.48 | 108.98 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.7.0 | 21.00 | 219.43 | 240.43 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.7.0 | 20.00 | 240.97 | 260.97 | OK | |
| r-devel-windows-x86_64 | 0.7.0 | 14.00 | 132.00 | 146.00 | ERROR | |
| r-patched-linux-x86_64 | 0.7.0 | 11.25 | 125.90 | 137.15 | OK | |
| r-release-linux-x86_64 | 0.7.0 | 10.53 | 125.91 | 136.44 | OK | |
| r-release-macos-arm64 | 0.7.0 | OK | ||||
| r-release-macos-x86_64 | 0.7.0 | 6.00 | 104.00 | 110.00 | OK | |
| r-release-windows-x86_64 | 0.7.0 | 14.00 | 132.00 | 146.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.7.0 | 7.00 | 89.00 | 96.00 | OK | |
| r-oldrel-windows-x86_64 | 0.7.0 | 19.00 | 167.00 | 186.00 | OK |
Version: 0.7.0
Check: tests
Result: ERROR
Running 'testthat.R' [11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(envalysis)
>
> test_check("envalysis")
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
number of blank values <= 1; LOD is estimated from the calibration curve
number of blank values <= 1; LOD is estimated from the calibration curve
number of blank values <= 1; LOD is estimated from the calibration curve
Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, :
f() values at end points not of opposite sign
Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, :
f() values at end points not of opposite sign
Saving _problems/test-calibration-159.R
Loading required package: MASS
'drc' has been loaded.
Please cite R and 'drc' if used for a publication,
for references type 'citation()' and 'citation('drc')'.
Attaching package: 'drc'
The following objects are masked from 'package:stats':
gaussian, getInitial
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-calibration.R:81:1', 'test-texture.R:62:1',
'test-weight_select.R:13:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-calibration.R:154:3'): batch calibration works as expected ─────
Error in ``[.data.table`(dt$seq, , `:=`(`Calc Conc`, inv_predict(calibration(Area ~ `Spec Conc`, .SD[Type == "Standard"]), Area, below_lod = 0)), by = .(Compound, Batch))`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-calibration.R:154:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─testthat::expect_warning(...)
8. │ └─testthat:::expect_condition_matching_(...)
9. │ └─testthat:::quasi_capture(...)
10. │ ├─testthat (local) .capture(...)
11. │ │ └─base::withCallingHandlers(...)
12. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
13. ├─testthat::expect_warning(...)
14. │ └─testthat:::expect_condition_matching_(...)
15. │ └─testthat:::quasi_capture(...)
16. │ ├─testthat (local) .capture(...)
17. │ │ └─base::withCallingHandlers(...)
18. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
19. ├─testthat::expect_warning(...)
20. │ └─testthat:::expect_condition_matching_(...)
21. │ └─testthat:::quasi_capture(...)
22. │ ├─testthat (local) .capture(...)
23. │ │ └─base::withCallingHandlers(...)
24. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
25. ├─testthat::expect_warning(...)
26. │ └─testthat:::expect_condition_matching_(...)
27. │ └─testthat:::quasi_capture(...)
28. │ ├─testthat (local) .capture(...)
29. │ │ └─base::withCallingHandlers(...)
30. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
31. ├─testthat::expect_warning(...)
32. │ └─testthat:::expect_condition_matching_(...)
33. │ └─testthat:::quasi_capture(...)
34. │ ├─testthat (local) .capture(...)
35. │ │ └─base::withCallingHandlers(...)
36. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
37. ├─...[]
38. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'calibration.Rmd' using rmarkdown
Quitting from calibration.Rmd:122-127 [calibration]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 6/6 in VECTOR_ELT
---
Backtrace:
▆
1. ├─...[]
2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'calibration.Rmd' failed with diagnostics:
attempt access index 6/6 in VECTOR_ELT
--- failed re-building 'calibration.Rmd'
--- re-building 'texture.Rmd' using rmarkdown
--- finished re-building 'texture.Rmd'
--- re-building 'theme_publish.Rmd' using rmarkdown
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
--- finished re-building 'theme_publish.Rmd'
SUMMARY: processing the following file failed:
'calibration.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
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