CRAN Package Check Results for Package viralmodels

Last updated on 2025-05-17 17:49:36 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.3.3	14.66	115.06	129.72	ERROR
r-devel-linux-x86_64-debian-gcc	1.3.3	10.44	80.95	91.39	ERROR
r-devel-linux-x86_64-fedora-clang	1.3.3			214.24	ERROR
r-devel-linux-x86_64-fedora-gcc	1.3.3			206.25	ERROR
r-devel-windows-x86_64	1.3.3	17.00	179.00	196.00	OK
r-patched-linux-x86_64	1.3.3	11.90	192.82	204.72	OK
r-release-linux-x86_64	1.3.3	13.35	193.64	206.99	OK
r-release-macos-arm64	1.3.3			96.00	OK
r-release-macos-x86_64	1.3.3			135.00	OK
r-release-windows-x86_64	1.3.3	15.00	184.00	199.00	OK
r-oldrel-macos-arm64	1.3.3			86.00	OK
r-oldrel-macos-x86_64	1.3.3			142.00	OK
r-oldrel-windows-x86_64	1.3.3	19.00	235.00	254.00	OK

Additional issues

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Check Details

Version: 1.3.3
Check: tests
Result: ERROR Running ‘testthat.R’ [7s/10s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(viralmodels) > > test_check("viralmodels") -- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 -- v dplyr 1.1.4 v readr 2.1.5 v forcats 1.0.0 v stringr 1.5.1 v ggplot2 3.5.2 v tibble 3.2.1 v lubridate 1.9.4 v tidyr 1.3.1 v purrr 1.0.4 -- Conflicts ------------------------------------------ tidyverse_conflicts() -- x readr::edition_get() masks testthat::edition_get() x dplyr::filter() masks stats::filter() x purrr::is_null() masks testthat::is_null() x dplyr::lag() masks stats::lag() x readr::local_edition() masks testthat::local_edition() x dplyr::matches() masks tidyr::matches(), testthat::matches() i Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors Loading required package: parsnip Attaching package: 'kernlab' The following object is masked from 'package:purrr': cross The following object is masked from 'package:ggplot2': alpha [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-viralmodel.R:6:3'): `viralmodel()` works ─────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralmodel.R:6:3 ── Error ('test-viralpreds.R:5:3'): viralpreds() works ───────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralpreds.R:5:3 ── Error ('test-viraltab.R:6:3'): viraltab() works ───────────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viraltab.R:6:3 ── Error ('test-viralvis.R:6:3'): `viralvis()` plots as expected ─────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralvis.R:6:3 [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] Deleting unused snapshots: • viralvis/viralvis.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.3.3
Check: tests
Result: ERROR Running ‘testthat.R’ [5s/7s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(viralmodels) > > test_check("viralmodels") -- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 -- v dplyr 1.1.4 v readr 2.1.5 v forcats 1.0.0 v stringr 1.5.1 v ggplot2 3.5.2 v tibble 3.2.1 v lubridate 1.9.4 v tidyr 1.3.1 v purrr 1.0.4 -- Conflicts ------------------------------------------ tidyverse_conflicts() -- x readr::edition_get() masks testthat::edition_get() x dplyr::filter() masks stats::filter() x purrr::is_null() masks testthat::is_null() x dplyr::lag() masks stats::lag() x readr::local_edition() masks testthat::local_edition() x dplyr::matches() masks tidyr::matches(), testthat::matches() i Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors Loading required package: parsnip Attaching package: 'kernlab' The following object is masked from 'package:purrr': cross The following object is masked from 'package:ggplot2': alpha [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-viralmodel.R:6:3'): `viralmodel()` works ─────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralmodel.R:6:3 ── Error ('test-viralpreds.R:5:3'): viralpreds() works ───────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralpreds.R:5:3 ── Error ('test-viraltab.R:6:3'): viraltab() works ───────────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viraltab.R:6:3 ── Error ('test-viralvis.R:6:3'): `viralvis()` plots as expected ─────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralvis.R:6:3 [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] Deleting unused snapshots: • viralvis/viralvis.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.3
Check: tests
Result: ERROR Running ‘testthat.R’ [11s/31s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(viralmodels) > > test_check("viralmodels") -- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 -- v dplyr 1.1.4 v readr 2.1.5 v forcats 1.0.0 v stringr 1.5.1 v ggplot2 3.5.2 v tibble 3.2.1 v lubridate 1.9.4 v tidyr 1.3.1 v purrr 1.0.4 -- Conflicts ------------------------------------------ tidyverse_conflicts() -- x readr::edition_get() masks testthat::edition_get() x dplyr::filter() masks stats::filter() x purrr::is_null() masks testthat::is_null() x dplyr::lag() masks stats::lag() x readr::local_edition() masks testthat::local_edition() x dplyr::matches() masks tidyr::matches(), testthat::matches() i Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors Loading required package: parsnip Attaching package: 'kernlab' The following object is masked from 'package:purrr': cross The following object is masked from 'package:ggplot2': alpha [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-viralmodel.R:6:3'): `viralmodel()` works ─────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralmodel.R:6:3 ── Error ('test-viralpreds.R:5:3'): viralpreds() works ───────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralpreds.R:5:3 ── Error ('test-viraltab.R:6:3'): viraltab() works ───────────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viraltab.R:6:3 ── Error ('test-viralvis.R:6:3'): `viralvis()` plots as expected ─────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralvis.R:6:3 [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] Deleting unused snapshots: • viralvis/viralvis.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.3.3
Check: tests
Result: ERROR Running ‘testthat.R’ [11s/30s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(viralmodels) > > test_check("viralmodels") -- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 -- v dplyr 1.1.4 v readr 2.1.5 v forcats 1.0.0 v stringr 1.5.1 v ggplot2 3.5.2 v tibble 3.2.1 v lubridate 1.9.4 v tidyr 1.3.1 v purrr 1.0.4 -- Conflicts ------------------------------------------ tidyverse_conflicts() -- x readr::edition_get() masks testthat::edition_get() x dplyr::filter() masks stats::filter() x purrr::is_null() masks testthat::is_null() x dplyr::lag() masks stats::lag() x readr::local_edition() masks testthat::local_edition() x dplyr::matches() masks tidyr::matches(), testthat::matches() i Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors Loading required package: parsnip Attaching package: 'kernlab' The following object is masked from 'package:purrr': cross The following object is masked from 'package:ggplot2': alpha [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-viralmodel.R:6:3'): `viralmodel()` works ─────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralmodel.R:6:3 ── Error ('test-viralpreds.R:5:3'): viralpreds() works ───────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralpreds.R:5:3 ── Error ('test-viraltab.R:6:3'): viraltab() works ───────────────────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viraltab.R:6:3 ── Error ('test-viralvis.R:6:3'): `viralvis()` plots as expected ─────────────── <packageNotFoundError/error/condition> Error in `library(kknn)`: there is no package called 'kknn' Backtrace: ▆ 1. └─base::library(kknn) at test-viralvis.R:6:3 [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] Deleting unused snapshots: • viralvis/viralvis.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc