CRAN Package Check Results for Package ukbnmr

Last updated on 2025-12-28 01:48:56 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	3.3.1	12.08	60.90	72.98	OK
r-devel-linux-x86_64-debian-gcc	3.3.1	8.37	42.38	50.75	OK
r-devel-linux-x86_64-fedora-clang	3.3.1	24.00	103.01	127.01	OK
r-devel-linux-x86_64-fedora-gcc	3.3.1	21.00	119.53	140.53	OK
r-devel-windows-x86_64	3.3.1	12.00	68.00	80.00	ERROR
r-patched-linux-x86_64	3.3.1	11.23	54.98	66.21	OK
r-release-linux-x86_64	3.3.1	11.59	55.45	67.04	OK
r-release-macos-arm64	3.3.1	3.00	19.00	22.00	OK
r-release-macos-x86_64	3.3.1	8.00	70.00	78.00	OK
r-release-windows-x86_64	3.3.1	12.00	67.00	79.00	OK
r-oldrel-macos-arm64	3.3.1	3.00	27.00	30.00	OK
r-oldrel-macos-x86_64	3.3.1	8.00	104.00	112.00	OK
r-oldrel-windows-x86_64	3.3.1	17.00	84.00	101.00	OK

Check Details

Version: 3.3.1
Check: examples
Result: ERROR Running examples in 'ukbnmr-Ex.R' failed The error most likely occurred in: > ### Name: remove_technical_variation > ### Title: Remove technical variation from NMR biomarker data in UK > ### Biobank. > ### Aliases: remove_technical_variation > > ### ** Examples > > ukb_data <- ukbnmr::test_data # Toy example dataset for testing package > processed <- remove_technical_variation(ukb_data) Checking for revelant UKB fields... Extracting and pre-processing data... Checking for required sample processing fields needed for QC procedure... Processing sample processing fields for QC procedure... Error in `[.data.table`(sinfo, , `:=`(Spectrometer.Date.Bin, bin_dates(Plate.Measured.Date, : attempt access index 17/17 in VECTOR_ELT Calls: remove_technical_variation -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 3.3.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'ukbnmr.Rmd' using rmarkdown Quitting from ukbnmr.Rmd:115-121 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 17/17 in VECTOR_ELT --- Backtrace: ▆ 1. └─ukbnmr::remove_technical_variation(exported) 2. ├─...[] 3. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ukbnmr.Rmd' failed with diagnostics: attempt access index 17/17 in VECTOR_ELT --- failed re-building 'ukbnmr.Rmd' SUMMARY: processing the following file failed: 'ukbnmr.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64