CRAN Package Check Results for Maintainer ‘Toby Hocking <toby.hocking at r-project.org>’

Last updated on 2025-06-23 21:51:16 CEST.

Package ERROR NOTE OK
animint2 1 12
atime 13
aum 13
binsegRcpp 13
directlabels 13
FLOPART 13
inlinedocs 13
LOPART 2 11
mlr3resampling 6 7
nc 13
neuroblastoma 3 10
PeakError 2 11
PeakSegDisk 13
PeakSegDP 2 11
PeakSegJoint 13
PeakSegOptimal 13
penaltyLearning 13
plotHMM 13
slurm 13
WeightedROC 13

Package animint2

Current CRAN status: NOTE: 1, OK: 12

Version: 2025.1.28
Check: installed package size
Result: NOTE installed size is 5.4Mb sub-directories of 1Mb or more: data 3.3Mb Flavor: r-oldrel-macos-x86_64

Package atime

Current CRAN status: OK: 13

Package aum

Current CRAN status: OK: 13

Package binsegRcpp

Current CRAN status: OK: 13

Package directlabels

Current CRAN status: OK: 13

Package FLOPART

Current CRAN status: OK: 13

Package inlinedocs

Current CRAN status: OK: 13

Package LOPART

Current CRAN status: NOTE: 2, OK: 11

Version: 2024.6.19
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Toby", "Dylan"), family = "Hocking", role = c("aut", "cre"), email = "toby.hocking@r-project.org") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package mlr3resampling

Current CRAN status: ERROR: 6, OK: 7

Version: 2025.3.30
Check: examples
Result: ERROR Running examples in ‘mlr3resampling-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: pvalue > ### Title: P-values for comparing Same/Other/All training > ### Aliases: pvalue > > ### ** Examples > > > N <- 80 > library(data.table) > set.seed(1) > reg.dt <- data.table( + x=runif(N, -2, 2), + person=rep(1:2, each=0.5*N)) > reg.pattern.list <- list( + easy=function(x, person)x^2, + impossible=function(x, person)(x^2)*(-1)^person) > SOAK <- mlr3resampling::ResamplingSameOtherSizesCV$new() > reg.task.list <- list() > for(pattern in names(reg.pattern.list)){ + f <- reg.pattern.list[[pattern]] + yname <- paste0("y_",pattern) + reg.dt[, (yname) := f(x,person)+rnorm(N, sd=0.5)][] + task.dt <- reg.dt[, c("x","person",yname), with=FALSE] + task.obj <- mlr3::TaskRegr$new( + pattern, task.dt, target=yname) + task.obj$col_roles$stratum <- "person" + task.obj$col_roles$subset <- "person" + reg.task.list[[pattern]] <- task.obj + } > reg.learner.list <- list( + mlr3::LearnerRegrFeatureless$new()) > if(requireNamespace("rpart")){ + reg.learner.list$rpart <- mlr3::LearnerRegrRpart$new() + } Loading required namespace: rpart > (bench.grid <- mlr3::benchmark_grid( + reg.task.list, + reg.learner.list, + SOAK)) task learner resampling <char> <char> <char> 1: easy regr.featureless same_other_sizes_cv 2: easy regr.rpart same_other_sizes_cv 3: impossible regr.featureless same_other_sizes_cv 4: impossible regr.rpart same_other_sizes_cv > bench.result <- mlr3::benchmark(bench.grid) Error in if (resampling$task_row_hash != task$row_hash) { : argument is of length zero Calls: <Anonymous> -> pmap_dtr -> mapply_list -> .mapply -> <Anonymous> Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 2025.3.30
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Newer_resamplers.Rmd’ using knitr ** Processing: figure/simulationScatter-1.png 432x432 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4572 bytes Input file size = 5424 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4060 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4060 Output IDAT size = 4060 bytes (512 bytes decrease) Output file size = 4138 bytes (1286 bytes = 23.71% decrease) Quitting from Newer_resamplers.Rmd:109-126 [SameOtherCV] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `if (resampling$task_row_hash != task$row_hash) ...`: ! argument is of length zero --- Backtrace: ▆ 1. └─mlr3::benchmark(same.other.grid, store_models = TRUE) 2. └─mlr3misc::pmap_dtr(...) 3. └─mlr3misc:::mapply_list(.f, .x, list(...)) 4. └─base::.mapply(.f, .dots, .args) 5. └─mlr3 (local) `<fn>`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Newer_resamplers.Rmd' failed with diagnostics: argument is of length zero --- failed re-building ‘Newer_resamplers.Rmd’ --- re-building ‘Older_resamplers.Rmd’ using knitr ** Processing: figure/unnamed-chunk-3-1.png 432x432 pixels, 8 bits/pixel, 245 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19674 bytes Input file size = 20523 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18124 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18124 Output IDAT size = 18124 bytes (1550 bytes decrease) Output file size = 18202 bytes (2321 bytes = 11.31% decrease) Quitting from Older_resamplers.Rmd:160-167 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `if (resampling$task_row_hash != task$row_hash) ...`: ! argument is of length zero --- Backtrace: ▆ 1. └─mlr3::benchmark(reg.bench.grid, store_models = TRUE) 2. └─mlr3misc::pmap_dtr(...) 3. └─mlr3misc:::mapply_list(.f, .x, list(...)) 4. └─base::.mapply(.f, .dots, .args) 5. └─mlr3 (local) `<fn>`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Older_resamplers.Rmd' failed with diagnostics: argument is of length zero --- failed re-building ‘Older_resamplers.Rmd’ SUMMARY: processing the following files failed: ‘Newer_resamplers.Rmd’ ‘Older_resamplers.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 2025.3.30
Check: examples
Result: ERROR Running examples in 'mlr3resampling-Ex.R' failed The error most likely occurred in: > ### Name: pvalue > ### Title: P-values for comparing Same/Other/All training > ### Aliases: pvalue > > ### ** Examples > > > N <- 80 > library(data.table) > set.seed(1) > reg.dt <- data.table( + x=runif(N, -2, 2), + person=rep(1:2, each=0.5*N)) > reg.pattern.list <- list( + easy=function(x, person)x^2, + impossible=function(x, person)(x^2)*(-1)^person) > SOAK <- mlr3resampling::ResamplingSameOtherSizesCV$new() > reg.task.list <- list() > for(pattern in names(reg.pattern.list)){ + f <- reg.pattern.list[[pattern]] + yname <- paste0("y_",pattern) + reg.dt[, (yname) := f(x,person)+rnorm(N, sd=0.5)][] + task.dt <- reg.dt[, c("x","person",yname), with=FALSE] + task.obj <- mlr3::TaskRegr$new( + pattern, task.dt, target=yname) + task.obj$col_roles$stratum <- "person" + task.obj$col_roles$subset <- "person" + reg.task.list[[pattern]] <- task.obj + } > reg.learner.list <- list( + mlr3::LearnerRegrFeatureless$new()) > if(requireNamespace("rpart")){ + reg.learner.list$rpart <- mlr3::LearnerRegrRpart$new() + } Loading required namespace: rpart > (bench.grid <- mlr3::benchmark_grid( + reg.task.list, + reg.learner.list, + SOAK)) task learner resampling <char> <char> <char> 1: easy regr.featureless same_other_sizes_cv 2: easy regr.rpart same_other_sizes_cv 3: impossible regr.featureless same_other_sizes_cv 4: impossible regr.rpart same_other_sizes_cv > bench.result <- mlr3::benchmark(bench.grid) Error in if (resampling$task_row_hash != task$row_hash) { : argument is of length zero Calls: <Anonymous> -> pmap_dtr -> mapply_list -> .mapply -> <Anonymous> Execution halted Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 2025.3.30
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Newer_resamplers.Rmd' using knitr Quitting from Newer_resamplers.Rmd:109-126 [SameOtherCV] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `if (resampling$task_row_hash != task$row_hash) ...`: ! argument is of length zero --- Backtrace: ▆ 1. └─mlr3::benchmark(same.other.grid, store_models = TRUE) 2. └─mlr3misc::pmap_dtr(...) 3. └─mlr3misc:::mapply_list(.f, .x, list(...)) 4. └─base::.mapply(.f, .dots, .args) 5. └─mlr3 (local) `<fn>`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Newer_resamplers.Rmd' failed with diagnostics: argument is of length zero --- failed re-building 'Newer_resamplers.Rmd' --- re-building 'Older_resamplers.Rmd' using knitr Quitting from Older_resamplers.Rmd:160-167 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `if (resampling$task_row_hash != task$row_hash) ...`: ! argument is of length zero --- Backtrace: ▆ 1. └─mlr3::benchmark(reg.bench.grid, store_models = TRUE) 2. └─mlr3misc::pmap_dtr(...) 3. └─mlr3misc:::mapply_list(.f, .x, list(...)) 4. └─base::.mapply(.f, .dots, .args) 5. └─mlr3 (local) `<fn>`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Older_resamplers.Rmd' failed with diagnostics: argument is of length zero --- failed re-building 'Older_resamplers.Rmd' SUMMARY: processing the following files failed: 'Newer_resamplers.Rmd' 'Older_resamplers.Rmd' Error: Vignette re-building failed. Execution halted Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Package nc

Current CRAN status: OK: 13

Package neuroblastoma

Current CRAN status: NOTE: 3, OK: 10

Version: 2023.9.3
Check: installed package size
Result: NOTE installed size is 7.9Mb sub-directories of 1Mb or more: data 7.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package PeakError

Current CRAN status: NOTE: 2, OK: 11

Version: 2023.9.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Toby", "Dylan"), family = "Hocking", role = c("aut", "cre"), email = "toby.hocking@r-project.org") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package PeakSegDisk

Current CRAN status: OK: 13

Package PeakSegDP

Current CRAN status: NOTE: 2, OK: 11

Version: 2024.1.24
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Toby", "Dylan"), family = "Hocking", role = c("aut", "cre"), email = "toby.hocking@r-project.org"), person(given = "Guillem", family = "Rigaill", role = "aut")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package PeakSegJoint

Current CRAN status: OK: 13

Package PeakSegOptimal

Current CRAN status: OK: 13

Package penaltyLearning

Current CRAN status: OK: 13

Package plotHMM

Current CRAN status: OK: 13

Package slurm

Current CRAN status: OK: 13

Package WeightedROC

Current CRAN status: NOTE: 13

Version: 2020.1.31
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Toby", "Dylan"), family = "Hocking", role = c("aut", "cre"), email = "toby.hocking@r-project.org") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2020.1.31
Check: Rd files
Result: NOTE checkRd: (-1) WeightedROC.Rd:10: Lost braces; missing escapes or markup? 10 | integer/numeric with values all in {0=negative,1=positive} or | ^ checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup? 11 | {1=negative,2=positive} or {-1=negative,1=positive}.} | ^ checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup? 11 | {1=negative,2=positive} or {-1=negative,1=positive}.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

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