CRAN Package Check Results for Package tidypopgen

Last updated on 2025-10-30 15:50:27 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.4.0	123.70	487.19	610.89	OK
r-devel-linux-x86_64-debian-gcc	0.4.0	78.37	371.90	450.27	OK
r-devel-linux-x86_64-fedora-clang	0.4.0	261.00	649.79	910.79	OK
r-devel-linux-x86_64-fedora-gcc	0.4.0	548.00	348.85	896.85	OK
r-devel-windows-x86_64	0.3.2	162.00	388.00	550.00	ERROR
r-patched-linux-x86_64	0.4.0	118.25	460.57	578.82	OK
r-release-linux-x86_64	0.4.0	116.88	457.73	574.61	OK
r-release-macos-arm64	0.4.0	43.00	189.00	232.00	OK
r-release-macos-x86_64	0.4.0	102.00	598.00	700.00	OK
r-release-windows-x86_64	0.4.0	179.00	400.00	579.00	OK
r-oldrel-macos-arm64	0.4.0	44.00	196.00	240.00	NOTE
r-oldrel-macos-x86_64	0.4.0	102.00	613.00	715.00	NOTE
r-oldrel-windows-x86_64	0.4.0	142.00	419.00	561.00	NOTE

Check Details

Version: 0.3.2
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [146s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(tidypopgen) Loading required package: dplyr Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: tibble > > test_check("tidypopgen") Adding missing grouping variables: `population` /usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/d/compiler/Ruby/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/Python/Scripts:/c/Program Files/Python:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/PuTTY:/c/Program Files (x86)/WinSCP:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files (x86)/Windows Kits/10/Windows Performance Toolkit:/c/Program Files/gs/gs/bin:/c/Program Files/jdk-11.0.18.10-hotspot/bin:/d/compiler/perl/c/bin:/d/compiler/perl/perl/site/bin:/d/compiler/perl/perl/bin:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R/bin/x64/) /usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/d/compiler/Ruby/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/Python/Scripts:/c/Program Files/Python:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/PuTTY:/c/Program Files (x86)/WinSCP:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files (x86)/Windows Kits/10/Windows Performance Toolkit:/c/Program Files/gs/gs/bin:/c/Program Files/jdk-11.0.18.10-hotspot/bin:/d/compiler/perl/c/bin:/d/compiler/perl/perl/site/bin:/d/compiler/perl/perl/bin:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R/bin/x64/) [ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ] ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ • (system2("which", args = "admixture", stdout = NULL) != 0) && (2): 'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1' • On CRAN (1): 'test_gt_pca.R:348:1' • {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ────────────────────── as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`). `actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg" `expected[2:2]`: "ggplot" [ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Version: 0.4.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'admixtools', 'LEA' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.4.0
Check: installed package size
Result: NOTE installed size is 9.3Mb sub-directories of 1Mb or more: doc 1.5Mb extdata 1.2Mb libs 5.7Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.4.0
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘LEA’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.4.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: 'admixtools' Flavor: r-oldrel-windows-x86_64