Last updated on 2025-09-18 01:51:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.2 | 125.29 | 471.04 | 596.33 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.3.2 | 77.90 | 340.77 | 418.67 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.2 | 853.50 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.2 | 847.44 | ERROR | |||
| r-devel-windows-x86_64 | 0.3.2 | 161.00 | 427.00 | 588.00 | OK | |
| r-patched-linux-x86_64 | 0.3.2 | 122.04 | 438.79 | 560.83 | ERROR | |
| r-release-linux-x86_64 | 0.3.2 | 115.95 | 443.49 | 559.44 | ERROR | |
| r-release-macos-arm64 | 0.3.2 | 240.00 | OK | |||
| r-release-macos-x86_64 | 0.3.2 | 418.00 | OK | |||
| r-release-windows-x86_64 | 0.3.2 | 186.00 | 448.00 | 634.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.3.2 | 237.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.3.2 | 431.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.3.2 | 213.00 | 615.00 | 828.00 | ERROR |
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [214s/234s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [172s/153s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
[ FAIL 2 | WARN 4 | SKIP 4 | PASS 976 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_gt_as_plink.R:195:5'): family.ID equals sample.ID from vcf ─────
Error in `file(file, "rt")`: cannot open the connection
Backtrace:
▆
1. └─utils::read.table(fam_path, header = FALSE, stringsAsFactors = FALSE) at test_gt_as_plink.R:195:5
2. └─base::file(file, "rt")
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 2 | WARN 4 | SKIP 4 | PASS 976 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [224s/233s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
which: no admixture in (/usr/local/clang/bin:/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/lib64/openmpi/bin)
which: no admixture in (/usr/local/clang/bin:/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/lib64/openmpi/bin)
[ FAIL 1 | WARN 3 | SKIP 5 | PASS 967 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {LEA} is not installed (1): 'test_gt_snmf.R:1:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 3 | SKIP 5 | PASS 967 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [226s/334s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
which: no admixture in (/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin)
which: no admixture in (/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin)
[ FAIL 1 | WARN 3 | SKIP 5 | PASS 967 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {LEA} is not installed (1): 'test_gt_snmf.R:1:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 3 | SKIP 5 | PASS 967 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [194s/251s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [200s/275s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.3.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [147s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
/usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R-4.5.1/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/d/compiler/Ruby/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/Python/Scripts:/c/Program Files/Python:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/PuTTY:/c/Program Files (x86)/WinSCP:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files (x86)/Windows Kits/10/Windows Performance Toolkit:/c/Program Files/gs/gs/bin:/c/Program Files/jdk-11.0.18.10-hotspot/bin:/d/compiler/perl/c/bin:/d/compiler/perl/perl/site/bin:/d/compiler/perl/perl/bin:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R-4.5.1/bin/x64/)
/usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R-4.5.1/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/d/compiler/Ruby/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/Python/Scripts:/c/Program Files/Python:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/PuTTY:/c/Program Files (x86)/WinSCP:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files (x86)/Windows Kits/10/Windows Performance Toolkit:/c/Program Files/gs/gs/bin:/c/Program Files/jdk-11.0.18.10-hotspot/bin:/d/compiler/perl/c/bin:/d/compiler/perl/perl/site/bin:/d/compiler/perl/perl/bin:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R-4.5.1/bin/x64/)
[ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.3.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'admixtools', 'LEA'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.3.2
Check: installed package size
Result: NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
doc 1.2Mb
libs 5.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.3.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'admixtools'
Flavor: r-oldrel-windows-x86_64
Version: 0.3.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [202s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
/usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R-4.4.3/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/AdoptOpenJDK/jdk-11.0.11.9-hotspot/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/sourceforge/ipmiutil:/c/Program Files/Python39:/c/Program Files/Python39/Scripts:/d/Compiler/Ruby/bin:/c/Program Files (x86)/WinSCP:/c/Program Files/gs/gs/bin:/c/Program Files/Supermicro/SuperDoctor5:/c/Program Files/Intel/Intel(R) Memory and Storage Tool:/c/Program Files/PuTTY:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/c/Users/CRAN/AppData/Roaming/TinyTeX/bin/win32:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R-4.4.3/bin/x64/)
/usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R-4.4.3/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/AdoptOpenJDK/jdk-11.0.11.9-hotspot/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/sourceforge/ipmiutil:/c/Program Files/Python39:/c/Program Files/Python39/Scripts:/d/Compiler/Ruby/bin:/c/Program Files (x86)/WinSCP:/c/Program Files/gs/gs/bin:/c/Program Files/Supermicro/SuperDoctor5:/c/Program Files/Intel/Intel(R) Memory and Storage Tool:/c/Program Files/PuTTY:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/c/Users/CRAN/AppData/Roaming/TinyTeX/bin/win32:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R-4.4.3/bin/x64/)
[ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
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