CRAN Package Check Results for Maintainer ‘Thijs Janzen <thijsjanzen at gmail.com>’

Last updated on 2024-05-02 06:12:32 CEST.

Package	NOTE	OK
GenomeAdmixR	12
GUILDS		12
junctions		13
nLTT	9	3
nodeSub		12
simRestore		12
STEPCAM	9	3
treestats	1	12

Package GenomeAdmixR

Current CRAN status: NOTE: 12

Version: 2.1.7
Check: C++ specification
Result: NOTE Specified C++14: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.1.7
Check: Rd files
Result: NOTE checkRd: (-1) simulate_admixture.Rd:36: Lost braces 36 | \code{location}{ location of the marker under selection (in Morgan) } | ^ checkRd: (-1) simulate_ancestry.Rd:49: Lost braces 49 | \code{location}{ location of the marker under selection (in Morgan) } | ^ checkRd: (-1) simulate_ancestry_migration.Rd:59: Lost braces 59 | \code{location}{ location of the marker under selection (in Morgan) } | ^ checkRd: (-1) simulate_sequence.Rd:51: Lost braces 51 | \code{location}{ location of the marker under selection (in Morgan) } | ^ checkRd: (-1) simulate_sequence_migration.Rd:58: Lost braces 58 | \code{location}{ location of the marker under selection (in Morgan) } | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64

Version: 2.1.7
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘methods’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.1.7
Check: installed package size
Result: NOTE installed size is 6.6Mb sub-directories of 1Mb or more: doc 2.0Mb libs 4.0Mb Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package GUILDS

Current CRAN status: OK: 12

Package junctions

Current CRAN status: OK: 13

Package nLTT

Current CRAN status: NOTE: 9, OK: 3

Version: 1.4.9
Check: Rd files
Result: NOTE checkRd: (-1) check_input_event_times.Rd:16-17: Lost braces in \itemize; meant \describe ? checkRd: (-1) check_input_event_times.Rd:18-19: Lost braces in \itemize; meant \describe ? checkRd: (-1) check_time_unit.Rd:12-13: Lost braces in \itemize; meant \describe ? checkRd: (-1) check_time_unit.Rd:14-15: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_params_doc.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_params_doc.Rd:32-33: Lost braces in \itemize; meant \describe ? checkRd: (-1) nltt_diff_exact_brts.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) nltt_diff_exact_brts.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) nltt_diff_exact_brts.Rd:36-37: Lost braces in \itemize; meant \describe ? checkRd: (-1) nltt_diff_exact_brts.Rd:38-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) nltt_diff_exact_extinct.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) nltt_diff_exact_extinct.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) nltt_diff_exact_extinct.Rd:37-38: Lost braces in \itemize; meant \describe ? checkRd: (-1) nltt_diff_exact_extinct.Rd:39-40: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64

Package nodeSub

Current CRAN status: OK: 12

Package simRestore

Current CRAN status: OK: 12

Package STEPCAM

Current CRAN status: NOTE: 9, OK: 3

Version: 1.2
Check: Rd files
Result: NOTE checkRd: (-1) STEPCAM_ABC.Rd:19: Lost braces 19 | \code{rows}{ every row corresponds to a different plot or community} \cr | ^ checkRd: (-1) STEPCAM_ABC.Rd:20: Lost braces 20 | \code{columns}{ every column corresponds to a different species.} \cr | ^ checkRd: (-1) STEPCAM_ABC.Rd:25: Lost braces 25 | \code{rows}{ every row corresponds to a different species} \cr | ^ checkRd: (-1) STEPCAM_ABC.Rd:26: Lost braces 26 | \code{columns}{ the first column contains the name of the species, every consecutive column corresponds to a different trait} \cr | ^ checkRd: (-1) plotSTEPCAM.Rd:16: Lost braces 16 | - \code{DA}{ a vector containing the posterior distribution for the parameter dispersal assembly} \cr | ^ checkRd: (-1) plotSTEPCAM.Rd:17: Lost braces 17 | - \code{HF}{ a vector containing the posterior distribution for the parameter habitat filtering} \cr | ^ checkRd: (-1) plotSTEPCAM.Rd:18: Lost braces 18 | - \code{LS}{ a vector containing the posterior distribution for the parameter limiting similarity} \cr | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64

Package treestats

Current CRAN status: NOTE: 1, OK: 12

Version: 1.0.5
Check: installed package size
Result: NOTE installed size is 5.0Mb sub-directories of 1Mb or more: libs 4.5Mb Flavor: r-oldrel-macos-arm64