Last updated on 2025-08-30 09:50:24 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [81s/113s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.662, system: 0.079, elapsed: 2.460 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.121, system: 0.256, elapsed: 13.376 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.018, elapsed: 0.273 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.967, system: 0.291, elapsed: 6.095 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.007, elapsed: 0.234 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.657, system: 0.681, elapsed: 23.269 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.536, system: 0.047, elapsed: 2.269 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.904, system: 0.109, elapsed: 10.870 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.018, elapsed: 0.269 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.879, system: 0.273, elapsed: 5.610 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.007, elapsed: 0.191 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.204, system: 0.481, elapsed: 19.989 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.749, system: 0.089, elapsed: 2.746 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.144, system: 0.286, elapsed: 11.896 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.014, elapsed: 0.254 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.802, system: 0.241, elapsed: 6.048 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.004, elapsed: 0.262 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.131, system: 0.204, elapsed: 1.203 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.807, system: 0.874, elapsed: 23.421 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.435, system: 0.028, elapsed: 2.454 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.902, system: 0.054, elapsed: 13.443 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.012, elapsed: 0.287 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.649, system: 0.170, elapsed: 5.770 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.239 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.134, system: 0.444, elapsed: 15.950 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.112, system: 0.740, elapsed: 39.213 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.578, system: 0.052, elapsed: 2.283 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.002, system: 0.118, elapsed: 13.257 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.015, elapsed: 0.284 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.581, system: 0.188, elapsed: 5.424 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.004, elapsed: 0.233 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.048, system: 0.396, elapsed: 22.273 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.485, system: 0.027, elapsed: 2.214 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.904, system: 0.064, elapsed: 12.835 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.257 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.535, system: 0.149, elapsed: 5.229 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.005, elapsed: 0.234 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.799, system: 0.280, elapsed: 21.533 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.547, system: 0.032, elapsed: 3.018 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.949, system: 0.131, elapsed: 13.363 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.014, elapsed: 0.311 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.575, system: 0.202, elapsed: 6.486 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.014, elapsed: 0.325 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.055, system: 0.255, elapsed: 1.302 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.098, system: 0.683, elapsed: 25.865 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.594, system: 0.066, elapsed: 2.695 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.035, system: 0.116, elapsed: 13.190 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.280 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.550, system: 0.159, elapsed: 5.703 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.004, elapsed: 0.277 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 9.895, system: 0.415, elapsed: 15.215 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.043, system: 0.800, elapsed: 38.302 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64
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