Last updated on 2025-08-09 11:50:44 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/111s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.531, system: 0.048, elapsed: 2.080 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.905, system: 0.102, elapsed: 11.375 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.014, elapsed: 0.288 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.678, system: 0.181, elapsed: 5.202 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.271 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.016, system: 0.372, elapsed: 19.955 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.414, system: 0.027, elapsed: 1.813 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.974, system: 0.067, elapsed: 13.744 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.012, elapsed: 0.340 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.700, system: 0.157, elapsed: 6.266 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.003, elapsed: 0.299 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.975, system: 0.284, elapsed: 23.321 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.497, system: 0.027, elapsed: 2.475 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.968, system: 0.068, elapsed: 15.056 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.010, elapsed: 0.308 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.666, system: 0.178, elapsed: 5.883 seconds]
Computing values for grid cells...
... done. [user: 0.157, system: 0.003, elapsed: 0.248 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.136, system: 0.199, elapsed: 1.277 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.218, system: 0.507, elapsed: 26.341 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.446, system: 0.030, elapsed: 2.223 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.048, system: 0.082, elapsed: 12.347 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.013, elapsed: 0.298 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.711, system: 0.181, elapsed: 5.410 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.003, elapsed: 0.220 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.255, system: 0.467, elapsed: 13.695 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.439, system: 0.805, elapsed: 35.144 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/106s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.525, system: 0.043, elapsed: 2.148 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.964, system: 0.083, elapsed: 13.675 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.014, elapsed: 0.262 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.492, system: 0.187, elapsed: 4.357 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.004, elapsed: 0.170 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.851, system: 0.350, elapsed: 21.316 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.468, system: 0.032, elapsed: 2.113 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.988, system: 0.063, elapsed: 14.608 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.182, system: 0.011, elapsed: 0.229 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.621, system: 0.185, elapsed: 4.808 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.005, elapsed: 0.235 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.968, system: 0.322, elapsed: 22.702 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.533, system: 0.028, elapsed: 1.983 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.918, system: 0.074, elapsed: 12.453 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.010, elapsed: 0.233 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.443, system: 0.157, elapsed: 3.946 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.007, elapsed: 0.207 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.047, system: 0.210, elapsed: 0.806 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.921, system: 0.527, elapsed: 20.456 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.435, system: 0.026, elapsed: 1.651 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.984, system: 0.081, elapsed: 12.359 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.012, elapsed: 0.245 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.580, system: 0.214, elapsed: 5.380 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.007, elapsed: 0.275 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.097, system: 0.564, elapsed: 13.412 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.085, system: 0.935, elapsed: 34.178 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64
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