Last updated on 2025-10-10 15:50:27 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/141s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.476, system: 0.037, elapsed: 2.532 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.019, system: 0.078, elapsed: 16.066 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.013, elapsed: 0.325 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.740, system: 0.180, elapsed: 6.816 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.003, elapsed: 0.294 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.135, system: 0.333, elapsed: 26.987 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.442, system: 0.027, elapsed: 2.298 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.992, system: 0.097, elapsed: 14.258 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.012, elapsed: 0.327 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.681, system: 0.162, elapsed: 8.966 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.003, elapsed: 0.464 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.988, system: 0.320, elapsed: 27.285 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.493, system: 0.026, elapsed: 4.008 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.982, system: 0.053, elapsed: 22.073 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.011, elapsed: 0.339 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.709, system: 0.174, elapsed: 6.773 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.320 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.145, system: 0.218, elapsed: 1.280 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.292, system: 0.504, elapsed: 36.194 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.429, system: 0.026, elapsed: 2.385 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.017, system: 0.048, elapsed: 14.753 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.012, elapsed: 0.309 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.791, system: 0.183, elapsed: 6.312 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.005, elapsed: 0.305 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.281, system: 0.469, elapsed: 17.600 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.547, system: 0.768, elapsed: 42.814 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [77s/127s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.563, system: 0.045, elapsed: 2.412 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.957, system: 0.078, elapsed: 13.233 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.014, elapsed: 0.308 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.522, system: 0.175, elapsed: 5.539 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.005, elapsed: 0.259 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.938, system: 0.340, elapsed: 22.641 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.495, system: 0.028, elapsed: 2.061 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.952, system: 0.080, elapsed: 13.442 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.179, system: 0.013, elapsed: 0.289 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.538, system: 0.155, elapsed: 4.752 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.167 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.858, system: 0.310, elapsed: 21.430 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.508, system: 0.028, elapsed: 2.247 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.866, system: 0.060, elapsed: 17.784 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.177, system: 0.010, elapsed: 0.278 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.495, system: 0.156, elapsed: 5.420 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.013, elapsed: 0.263 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.053, system: 0.230, elapsed: 1.079 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.889, system: 0.528, elapsed: 27.977 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.467, system: 0.034, elapsed: 3.075 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.825, system: 0.056, elapsed: 16.206 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.011, elapsed: 0.376 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.470, system: 0.155, elapsed: 6.971 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.004, elapsed: 0.318 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 9.965, system: 0.437, elapsed: 18.044 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 24.709, system: 0.718, elapsed: 46.202 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64
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