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Last updated on 2026-04-17 11:54:34 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 12 |
Current CRAN status: ERROR: 2, OK: 12
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [108s/536s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.573, system: 0.049, elapsed: 3.465 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.760, system: 0.170, elapsed: 19.252 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.022, elapsed: 1.353 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.934, system: 0.878, elapsed: 111.580 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.008, elapsed: 0.409 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.249, system: 1.154, elapsed: 137.083 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.676, system: 0.070, elapsed: 3.866 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.480, system: 0.141, elapsed: 14.543 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.021, elapsed: 1.083 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.941, system: 1.962, elapsed: 174.755 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.010, elapsed: 0.667 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.099, system: 2.360, elapsed: 196.929 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.673, system: 0.074, elapsed: 7.827 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.865, system: 0.164, elapsed: 35.758 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.323, system: 0.031, elapsed: 1.635 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 10.009, system: 1.425, elapsed: 61.150 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.006, elapsed: 0.171 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
2 1 4 3
... computing probabilities from permuted values ...
... done. [user: 1.187, system: 0.322, elapsed: 1.703 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 24.117, system: 2.360, elapsed: 111.492 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.542, system: 0.046, elapsed: 1.329 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.669, system: 0.072, elapsed: 10.526 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.238, system: 0.018, elapsed: 0.422 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.451, system: 0.928, elapsed: 27.977 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.006, elapsed: 0.211 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.463, system: 0.759, elapsed: 38.882 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.503, system: 1.891, elapsed: 80.225 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [105s/404s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.930, system: 0.117, elapsed: 2.983 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.778, system: 0.254, elapsed: 17.303 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.023, elapsed: 0.611 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.455, system: 0.928, elapsed: 77.356 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.009, elapsed: 0.315 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.172, system: 1.386, elapsed: 99.447 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.607, system: 0.049, elapsed: 1.835 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.608, system: 0.080, elapsed: 12.675 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.018, elapsed: 0.967 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.198, system: 0.913, elapsed: 30.237 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.005, elapsed: 0.348 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.400, system: 1.098, elapsed: 46.769 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.594, system: 0.038, elapsed: 3.557 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.817, system: 0.233, elapsed: 20.033 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.021, elapsed: 1.130 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.714, system: 0.887, elapsed: 46.027 seconds]
Computing values for grid cells...
... done. [user: 0.192, system: 0.013, elapsed: 0.291 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.336, system: 0.346, elapsed: 1.608 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.573, system: 1.592, elapsed: 73.879 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.877, system: 0.094, elapsed: 3.207 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.642, system: 0.171, elapsed: 14.512 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.018, elapsed: 1.167 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.862, system: 0.907, elapsed: 128.282 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.005, elapsed: 0.246 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 13.478, system: 0.895, elapsed: 28.016 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 32.934, system: 2.134, elapsed: 176.527 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
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