Last updated on 2026-03-11 01:54:14 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 12 |
Current CRAN status: ERROR: 2, OK: 12
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/376s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.563, system: 0.045, elapsed: 3.561 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.720, system: 0.066, elapsed: 15.656 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.018, elapsed: 0.974 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.703, system: 0.701, elapsed: 41.926 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.004, elapsed: 0.176 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.953, system: 0.857, elapsed: 63.300 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.499, system: 0.027, elapsed: 2.334 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.604, system: 0.072, elapsed: 13.761 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.014, elapsed: 0.721 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.076, system: 0.784, elapsed: 84.670 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.005, elapsed: 0.198 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.136, system: 0.920, elapsed: 102.441 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.510, system: 0.030, elapsed: 2.095 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.676, system: 0.064, elapsed: 12.673 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.304, system: 0.015, elapsed: 1.088 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.829, system: 0.755, elapsed: 77.811 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.004, elapsed: 0.309 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.328, system: 0.301, elapsed: 1.353 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.517, system: 1.205, elapsed: 96.360 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.604, system: 0.038, elapsed: 2.558 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.620, system: 0.072, elapsed: 15.219 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.208, system: 0.015, elapsed: 0.380 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.717, system: 0.757, elapsed: 46.752 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.183 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.305, system: 0.647, elapsed: 37.834 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.366, system: 1.575, elapsed: 103.923 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/312s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.621, system: 0.042, elapsed: 2.636 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.533, system: 0.050, elapsed: 13.427 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.016, elapsed: 0.856 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.064, system: 0.870, elapsed: 113.536 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.186 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.175, system: 1.007, elapsed: 131.449 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.661, system: 0.045, elapsed: 2.289 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.762, system: 0.074, elapsed: 13.055 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.225, system: 0.016, elapsed: 0.644 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.517, system: 0.734, elapsed: 37.914 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.004, elapsed: 0.176 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.919, system: 0.892, elapsed: 54.879 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.553, system: 0.029, elapsed: 2.299 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.381, system: 0.052, elapsed: 11.329 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.209, system: 0.016, elapsed: 0.846 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.787, system: 0.701, elapsed: 52.693 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.006, elapsed: 0.222 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.251, system: 0.310, elapsed: 1.083 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.021, system: 1.141, elapsed: 69.449 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.611, system: 0.038, elapsed: 1.757 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.597, system: 0.070, elapsed: 12.625 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.016, elapsed: 1.027 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.604, system: 0.639, elapsed: 15.523 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.003, elapsed: 0.164 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.153, system: 0.677, elapsed: 17.136 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.005, system: 1.472, elapsed: 49.013 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
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