CRAN Package Check Results for Maintainer ‘Susanna Marquez <susanna.marquez at yale.edu>’

Last updated on 2025-12-28 03:52:18 CET.

Package	ERROR	NOTE	OK
alakazam			13
scoper			13
shazam	5		8
tigger		1	12

Package alakazam

Current CRAN status: OK: 13

Package scoper

Current CRAN status: OK: 13

Package shazam

Current CRAN status: ERROR: 5, OK: 8

Additional issues

M1mac

Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Baseline-Vignette.Rmd’ --- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘DistToNearest-Vignette.Rmd’ --- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Mutation-Vignette.Rmd’ --- re-building ‘Shmulate-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Shmulate-Vignette.Rmd’ --- re-building ‘Targeting-Vignette.Rmd’ using rmarkdown Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `names(x) <- value`: ! 'names' attribute [2] must be the same length as the vector [0] --- Backtrace: x 1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog") 2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: 'names' attribute [2] must be the same length as the vector [0] --- failed re-building ‘Targeting-Vignette.Rmd’ SUMMARY: processing the following file failed: ‘Targeting-Vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Baseline-Vignette.Rmd’ --- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘DistToNearest-Vignette.Rmd’ --- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Mutation-Vignette.Rmd’ --- re-building ‘Shmulate-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Shmulate-Vignette.Rmd’ --- re-building ‘Targeting-Vignette.Rmd’ using rmarkdown Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `names(x) <- value`: ! 'names' attribute [2] must be the same length as the vector [0] --- Backtrace: x 1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog") 2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: 'names' attribute [2] must be the same length as the vector [0] --- failed re-building ‘Targeting-Vignette.Rmd’ SUMMARY: processing the following file failed: ‘Targeting-Vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Baseline-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'Baseline-Vignette.Rmd' --- re-building 'DistToNearest-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'DistToNearest-Vignette.Rmd' --- re-building 'Mutation-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'Mutation-Vignette.Rmd' --- re-building 'Shmulate-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'Shmulate-Vignette.Rmd' --- re-building 'Targeting-Vignette.Rmd' using rmarkdown Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `names(x) <- value`: ! 'names' attribute [2] must be the same length as the vector [0] --- Backtrace: x 1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog") 2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: 'names' attribute [2] must be the same length as the vector [0] --- failed re-building 'Targeting-Vignette.Rmd' SUMMARY: processing the following file failed: 'Targeting-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

Package tigger

Current CRAN status: NOTE: 1, OK: 12

Version: 1.1.0
Check: installed package size
Result: NOTE installed size is 5.1Mb sub-directories of 1Mb or more: data 4.5Mb Flavor: r-oldrel-macos-arm64