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CRAN Package Check Results for Maintainer ‘Susanna Marquez <susanna.marquez at yale.edu>’

Last updated on 2026-04-17 11:54:34 CEST.

Package ERROR NOTE OK
alakazam 1 13
scoper 1 13
shazam 1 13
tigger 1 1 12

Package alakazam

Current CRAN status: ERROR: 1, OK: 13

Version: 1.4.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'AminoAcids-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `ad6cec456de4604e584dd4e652b25757342f8224.pdf' not found: using draft setting. Error: processing vignette 'AminoAcids-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/AminoAcids-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See AminoAcids-Vignette.log for more info. --- failed re-building 'AminoAcids-Vignette.Rmd' --- re-building 'Diversity-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `9b228bebcf93f875e4a1300d0f190606a6367a4b.pdf' not found: using draft setting. Error: processing vignette 'Diversity-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/Diversity-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Diversity-Vignette.log for more info. --- failed re-building 'Diversity-Vignette.Rmd' --- re-building 'Fastq-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `5be2fd74309905538d5fd155a12d5fe2bc04cd72.pdf' not found: using draft setting. Error: processing vignette 'Fastq-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/Fastq-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Fastq-Vignette.log for more info. --- failed re-building 'Fastq-Vignette.Rmd' --- re-building 'Files-Vignette.Rmd' using rmarkdown --- finished re-building 'Files-Vignette.Rmd' --- re-building 'GeneUsage-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `fcfb49dde8dcf3e28a0b736271af3706e7f5ca44.pdf' not found: using draft setting. Error: processing vignette 'GeneUsage-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/GeneUsage-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See GeneUsage-Vignette.log for more info. --- failed re-building 'GeneUsage-Vignette.Rmd' SUMMARY: processing the following files failed: 'AminoAcids-Vignette.Rmd' 'Diversity-Vignette.Rmd' 'Fastq-Vignette.Rmd' 'GeneUsage-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

Package scoper

Current CRAN status: ERROR: 1, OK: 13

Version: 1.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Scoper-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `e408ef60b58d48de6fc27fc435f23f2b20821302.pdf' not found: using draft setting. Error: processing vignette 'Scoper-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/scoper.Rcheck/vign_test/scoper/vignettes/Scoper-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Scoper-Vignette.log for more info. --- failed re-building 'Scoper-Vignette.Rmd' SUMMARY: processing the following file failed: 'Scoper-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

Package shazam

Current CRAN status: ERROR: 1, OK: 13

Version: 1.3.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Baseline-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `f90ee9fbd97d4038c7a026d83c40a37de2cb6e30.pdf' not found: using draft setting. Error: processing vignette 'Baseline-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Baseline-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Baseline-Vignette.log for more info. --- failed re-building 'Baseline-Vignette.Rmd' --- re-building 'DistToNearest-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `70c747c7f896400287a4f21576d0b6e30a9abe67.pdf' not found: using draft setting. Error: processing vignette 'DistToNearest-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/DistToNearest-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See DistToNearest-Vignette.log for more info. --- failed re-building 'DistToNearest-Vignette.Rmd' --- re-building 'Mutation-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `60289f045bd7e1d56a343a07413240211fcc9b08.pdf' not found: using draft setting. Error: processing vignette 'Mutation-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Mutation-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Mutation-Vignette.log for more info. --- failed re-building 'Mutation-Vignette.Rmd' --- re-building 'Shmulate-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `910026ff5038b41dc1bb392f0058bbc2434a10f9.pdf' not found: using draft setting. Error: processing vignette 'Shmulate-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Shmulate-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Shmulate-Vignette.log for more info. --- failed re-building 'Shmulate-Vignette.Rmd' --- re-building 'Targeting-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `ebf8c1125bd54f696748dafcc999fae964a12ee5.pdf' not found: using draft setting. Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Targeting-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Targeting-Vignette.log for more info. --- failed re-building 'Targeting-Vignette.Rmd' SUMMARY: processing the following files failed: 'Baseline-Vignette.Rmd' 'DistToNearest-Vignette.Rmd' 'Mutation-Vignette.Rmd' 'Shmulate-Vignette.Rmd' 'Targeting-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

Package tigger

Current CRAN status: ERROR: 1, NOTE: 1, OK: 12

Version: 1.1.3
Check: installed package size
Result: NOTE installed size is 5.1Mb sub-directories of 1Mb or more: data 4.6Mb Flavor: r-oldrel-macos-x86_64

Version: 1.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Tigger-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `faa0969108d922eb8eeadd2a98fe5814bdd73ce5.pdf' not found: using draft setting. Error: processing vignette 'Tigger-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/tigger.Rcheck/vign_test/tigger/vignettes/Tigger-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Tigger-Vignette.log for more info. --- failed re-building 'Tigger-Vignette.Rmd' SUMMARY: processing the following file failed: 'Tigger-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

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