CRAN Package Check Results for Package shazam

Last updated on 2025-12-28 01:48:53 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.3.0	51.39	624.94	676.33	ERROR
r-devel-linux-x86_64-debian-gcc	1.3.0	36.56	439.73	476.29	ERROR
r-devel-linux-x86_64-fedora-clang	1.3.0	96.00	1032.82	1128.82	ERROR
r-devel-linux-x86_64-fedora-gcc	1.3.0	94.00	1018.09	1112.09	ERROR
r-devel-windows-x86_64	1.3.0	52.00	637.00	689.00	ERROR
r-patched-linux-x86_64	1.3.0	53.02	597.36	650.38	OK
r-release-linux-x86_64	1.3.0	52.71	599.31	652.02	OK
r-release-macos-arm64	1.3.0				OK
r-release-macos-x86_64	1.3.0	33.00	497.00	530.00	OK
r-release-windows-x86_64	1.3.0	51.00	664.00	715.00	OK
r-oldrel-macos-arm64	1.3.0				OK
r-oldrel-macos-x86_64	1.3.0	34.00	534.00	568.00	OK
r-oldrel-windows-x86_64	1.3.0	72.00	822.00	894.00	OK

Additional issues

M1mac

Check Details

Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Baseline-Vignette.Rmd’ --- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘DistToNearest-Vignette.Rmd’ --- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Mutation-Vignette.Rmd’ --- re-building ‘Shmulate-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Shmulate-Vignette.Rmd’ --- re-building ‘Targeting-Vignette.Rmd’ using rmarkdown Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `names(x) <- value`: ! 'names' attribute [2] must be the same length as the vector [0] --- Backtrace: x 1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog") 2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: 'names' attribute [2] must be the same length as the vector [0] --- failed re-building ‘Targeting-Vignette.Rmd’ SUMMARY: processing the following file failed: ‘Targeting-Vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Baseline-Vignette.Rmd’ --- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘DistToNearest-Vignette.Rmd’ --- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Mutation-Vignette.Rmd’ --- re-building ‘Shmulate-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Shmulate-Vignette.Rmd’ --- re-building ‘Targeting-Vignette.Rmd’ using rmarkdown Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `names(x) <- value`: ! 'names' attribute [2] must be the same length as the vector [0] --- Backtrace: x 1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog") 2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: 'names' attribute [2] must be the same length as the vector [0] --- failed re-building ‘Targeting-Vignette.Rmd’ SUMMARY: processing the following file failed: ‘Targeting-Vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Baseline-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'Baseline-Vignette.Rmd' --- re-building 'DistToNearest-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'DistToNearest-Vignette.Rmd' --- re-building 'Mutation-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'Mutation-Vignette.Rmd' --- re-building 'Shmulate-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'Shmulate-Vignette.Rmd' --- re-building 'Targeting-Vignette.Rmd' using rmarkdown Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `names(x) <- value`: ! 'names' attribute [2] must be the same length as the vector [0] --- Backtrace: x 1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog") 2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: 'names' attribute [2] must be the same length as the vector [0] --- failed re-building 'Targeting-Vignette.Rmd' SUMMARY: processing the following file failed: 'Targeting-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64