CRAN Package Check Results for Package stacomiR

Last updated on 2025-10-09 17:50:53 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.6.1 25.16 259.03 284.19 ERROR
r-devel-linux-x86_64-debian-gcc 0.6.1 19.63 175.84 195.47 ERROR
r-devel-linux-x86_64-fedora-clang 0.6.1 440.44 ERROR
r-devel-linux-x86_64-fedora-gcc 0.6.1 421.19 OK
r-devel-windows-x86_64 0.6.1 29.00 274.00 303.00 ERROR
r-patched-linux-x86_64 0.6.1 27.39 244.14 271.53 ERROR
r-release-linux-x86_64 0.6.1 25.19 245.93 271.12 ERROR
r-release-macos-arm64 0.6.1 107.00 OK
r-release-macos-x86_64 0.6.1 257.00 OK
r-release-windows-x86_64 0.6.1 34.00 271.00 305.00 ERROR
r-oldrel-macos-arm64 0.6.1 104.00 OK
r-oldrel-macos-x86_64 0.6.1 208.00 OK
r-oldrel-windows-x86_64 0.6.1 39.00 358.00 397.00 ERROR

Check Details

Version: 0.6.1
Check: examples
Result: ERROR Running examples in ‘stacomiR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: report_silver_eel-class > ### Title: Class "report_silver_eel" > ### Aliases: report_silver_eel-class report_silver_eel > ### Keywords: classes > > ### ** Examples > > # launching stacomi without selecting the scheme or interface > stacomi( database_expected=FALSE) > # the following script will load data from the two Anguillere monitored in the Somme > > # If you have a working database > # the following line of code will create the r_silver dataset > # from the "fd80." schema in the database > ## Not run: > ##D stacomi(database_expected=TRUE, sch="fd80.") # overrides the default option sch = 'iav' > ##D # prompt for user and password, you can set these in the options, > ##D # including dbname and host > ##D if (interactive()){ > ##D if (!exists("user")){ > ##D user <- readline(prompt="Enter user: ") > ##D password <- readline(prompt="Enter password: ") > ##D } > ##D } > ##D options( > ##D stacomiR.dbname = "bd_contmig_nat", > ##D stacomiR.host ="localhost", > ##D stacomiR.port = "5432", > ##D stacomiR.user = user, > ##D stacomiR.user = password > ##D ) > ##D > ##D #create an instance of the class > ##D r_silver<-new("report_silver_eel") > ##D r_silver<-choice_c(r_silver, > ##D dc=c(2,6), > ##D horodatedebut="2010-09-01", > ##D horodatefin="2016-10-04", > ##D silent=FALSE) > ##D r_silver<-connect(r_silver) > ## End(Not run) > > # load the dataset generated by previous lines > data("r_silver") > # the calculation will fill the slot calcdata > r_silver<-calcule(r_silver) > # stages are in r_silver@calcdata[["6"]][,"stage"] > #look at data structure using str(r_silver@calcdata[["6"]]) > > # standard plot as drawn by Laurent Beaulaton (Analyse des donnees d'argenture acquises en France) > # showing Durif's stage according to size and eye diameter > plot(r_silver, plot.type=1) > > # number per month or year and Durif's stage (year if number of dc >1) > plot(r_silver, plot.type="2") > > # plot showing fulton's coefficient, and size weight graphs > # inspired from Acou et al., 2009 > # Differential Production and Condition Indices of Premigrant > # Eels in Two Small Atlantic Coastal Catchments > # of France > plot(r_silver, plot.type="3") Error in loadNamespace(x) : there is no package called ‘MASS’ Calls: plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.6.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘stacomir.Rmd’ using rmarkdown Quitting from stacomir.Rmd:349-366 [silver] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'MASS' --- Backtrace: ▆ 1. ├─base::plot(r_silver, plot.type = "3") 2. ├─stacomiR::plot(r_silver, plot.type = "3") 3. │ └─stacomiR (local) .local(x, ...) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'stacomir.Rmd' failed with diagnostics: there is no package called 'MASS' --- failed re-building ‘stacomir.Rmd’ SUMMARY: processing the following file failed: ‘stacomir.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.6.1
Check: examples
Result: ERROR Running examples in ‘stacomiR-Ex.R’ failed The error most likely occurred in: > ### Name: report_silver_eel-class > ### Title: Class "report_silver_eel" > ### Aliases: report_silver_eel-class report_silver_eel > ### Keywords: classes > > ### ** Examples > > # launching stacomi without selecting the scheme or interface > stacomi( database_expected=FALSE) > # the following script will load data from the two Anguillere monitored in the Somme > > # If you have a working database > # the following line of code will create the r_silver dataset > # from the "fd80." schema in the database > ## Not run: > ##D stacomi(database_expected=TRUE, sch="fd80.") # overrides the default option sch = 'iav' > ##D # prompt for user and password, you can set these in the options, > ##D # including dbname and host > ##D if (interactive()){ > ##D if (!exists("user")){ > ##D user <- readline(prompt="Enter user: ") > ##D password <- readline(prompt="Enter password: ") > ##D } > ##D } > ##D options( > ##D stacomiR.dbname = "bd_contmig_nat", > ##D stacomiR.host ="localhost", > ##D stacomiR.port = "5432", > ##D stacomiR.user = user, > ##D stacomiR.user = password > ##D ) > ##D > ##D #create an instance of the class > ##D r_silver<-new("report_silver_eel") > ##D r_silver<-choice_c(r_silver, > ##D dc=c(2,6), > ##D horodatedebut="2010-09-01", > ##D horodatefin="2016-10-04", > ##D silent=FALSE) > ##D r_silver<-connect(r_silver) > ## End(Not run) > > # load the dataset generated by previous lines > data("r_silver") > # the calculation will fill the slot calcdata > r_silver<-calcule(r_silver) > # stages are in r_silver@calcdata[["6"]][,"stage"] > #look at data structure using str(r_silver@calcdata[["6"]]) > > # standard plot as drawn by Laurent Beaulaton (Analyse des donnees d'argenture acquises en France) > # showing Durif's stage according to size and eye diameter > plot(r_silver, plot.type=1) > > # number per month or year and Durif's stage (year if number of dc >1) > plot(r_silver, plot.type="2") > > # plot showing fulton's coefficient, and size weight graphs > # inspired from Acou et al., 2009 > # Differential Production and Condition Indices of Premigrant > # Eels in Two Small Atlantic Coastal Catchments > # of France > plot(r_silver, plot.type="3") Error in loadNamespace(x) : there is no package called ‘MASS’ Calls: plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 0.6.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘stacomir.Rmd’ using rmarkdown Quitting from stacomir.Rmd:349-366 [silver] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'MASS' --- Backtrace: ▆ 1. ├─base::plot(r_silver, plot.type = "3") 2. ├─stacomiR::plot(r_silver, plot.type = "3") 3. │ └─stacomiR (local) .local(x, ...) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'stacomir.Rmd' failed with diagnostics: there is no package called 'MASS' --- failed re-building ‘stacomir.Rmd’ SUMMARY: processing the following file failed: ‘stacomir.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

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