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CRAN Package Check Results for Package speaq

Last updated on 2026-04-30 18:53:40 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.7.0 14.87 209.35 224.22 NOTE
r-devel-linux-x86_64-debian-gcc 2.7.0 9.72 109.36 119.08 ERROR
r-devel-linux-x86_64-fedora-clang 2.7.0 26.00 328.27 354.27 NOTE
r-devel-linux-x86_64-fedora-gcc 2.7.0 26.00 365.38 391.38 NOTE
r-devel-windows-x86_64 2.7.0 20.00 379.00 399.00 NOTE
r-patched-linux-x86_64 2.7.0 14.93 196.54 211.47 NOTE
r-release-linux-x86_64 2.7.0 12.85 195.56 208.41 NOTE
r-release-macos-arm64 2.7.0 4.00 98.00 102.00 NOTE
r-release-macos-x86_64 2.7.0 11.00 399.00 410.00 NOTE
r-release-windows-x86_64 2.7.0 19.00 369.00 388.00 NOTE
r-oldrel-macos-arm64 2.7.0 NOTE
r-oldrel-macos-x86_64 2.7.0 6.00 290.00 296.00 NOTE
r-oldrel-windows-x86_64 2.7.0 25.00 506.00 531.00 NOTE

Check Details

Version: 2.7.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Charlie Beirnaert <charlie_beirnaert@icloud.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Charlie", family = "Beirnaert", role = c("aut", "cre"), email = "charlie_beirnaert@icloud.com"), person(given = c("Trung", "Nghia"), family = "Vu", role = "aut"), person(given = "Pieter", family = "Meysman", role = "aut"), person(given = "Kris", family = "Laukens", role = "aut"), person(given = "Dirk", family = "Valkenborg", role = "aut")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.7.0
Check: Rd files
Result: NOTE checkRd: (-1) findRef.Rd:39: Lost braces 39 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405. | ^ checkRd: (-1) hClustAlign.Rd:70: Lost braces 70 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.7.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘classic_speaq_vignette.Rmd’ using rmarkdown Warning in eng_r(options) : Failed to tidy R code in chunk 'Unaligned_spectral_plots'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'Peak_detection'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'Reference_finding'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'Spectral_alignment'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'Spectral_alignment_optimal_maxShift'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'Spectral_segment_alignment'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'AlignedSpectral_plots'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'AlignedSpectral_plots_limited_height'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'Aligned_spectral_plots_customized'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'Quantitative_analysis'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'drawBW_1'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'drawBW_2'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. --- finished re-building ‘classic_speaq_vignette.Rmd’ --- re-building ‘speaq2_illustrations.Rmd’ using rmarkdown Quitting from speaq2_illustrations.Rmd:70-83 [detect winepeaks] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `serverSocket()`: ! creation of server socket failed: port 11678 cannot be opened --- Backtrace: ▆ 1. └─speaq::getWaveletPeaks(...) 2. └─parallel::makeCluster(nCPU) 3. └─parallel::makePSOCKcluster(names = spec, ...) 4. └─base::serverSocket(port = port) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'speaq2_illustrations.Rmd' failed with diagnostics: creation of server socket failed: port 11678 cannot be opened --- failed re-building ‘speaq2_illustrations.Rmd’ SUMMARY: processing the following file failed: ‘speaq2_illustrations.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

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