CRAN Package Check Results for Maintainer ‘Silvaneo dos Santos Jr. <silvaneojunior at utexas.edu>’

Last updated on 2025-06-04 15:50:07 CEST.

Package	ERROR	NOTE	OK
kDGLM	2	2	9

Package kDGLM

Current CRAN status: ERROR: 2, NOTE: 2, OK: 9

Version: 1.2.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘example1.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/example1_files/figure-html/unnamed-chunk-2-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 14175 bytes Input file size = 15045 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12898 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12849 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12712 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12670 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12670 Output IDAT size = 12670 bytes (1505 bytes decrease) Output file size = 12748 bytes (2297 bytes = 15.27% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/example1_files/figure-html/unnamed-chunk-6-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26729 bytes Input file size = 26843 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21012 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21012 Output IDAT size = 21012 bytes (5717 bytes decrease) Output file size = 21090 bytes (5753 bytes = 21.43% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/example1_files/figure-html/unnamed-chunk-9-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32088 bytes Input file size = 32202 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26038 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26038 Output IDAT size = 26038 bytes (6050 bytes decrease) Output file size = 26116 bytes (6086 bytes = 18.90% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/example1_files/figure-html/unnamed-chunk-12-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30535 bytes Input file size = 30649 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24239 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24239 Output IDAT size = 24239 bytes (6296 bytes decrease) Output file size = 24317 bytes (6332 bytes = 20.66% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/example1_files/figure-html/unnamed-chunk-15-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31864 bytes Input file size = 31978 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25551 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25551 Output IDAT size = 25551 bytes (6313 bytes decrease) Output file size = 25629 bytes (6349 bytes = 19.85% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/example1_files/figure-html/unnamed-chunk-16-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10208 bytes Input file size = 11078 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9047 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9047 Output IDAT size = 9047 bytes (1161 bytes decrease) Output file size = 9125 bytes (1953 bytes = 17.63% decrease) Quitting from example1.Rmd:329-363 [unnamed-chunk-17] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'left_join' applied to an object of class "NULL" --- Backtrace: ▆ 1. └─dplyr::left_join(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'example1.Rmd' failed with diagnostics: no applicable method for 'left_join' applied to an object of class "NULL" --- failed re-building ‘example1.Rmd’ --- re-building ‘fitting.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/fitting_files/figure-html/unnamed-chunk-4-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31012 bytes Input file size = 31126 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24573 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24573 Output IDAT size = 24573 bytes (6439 bytes decrease) Output file size = 24651 bytes (6475 bytes = 20.80% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/fitting_files/figure-html/unnamed-chunk-7-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36214 bytes Input file size = 36340 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30984 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30984 Output IDAT size = 30984 bytes (5230 bytes decrease) Output file size = 31062 bytes (5278 bytes = 14.52% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/fitting_files/figure-html/unnamed-chunk-8-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23167 bytes Input file size = 23269 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18993 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18993 Output IDAT size = 18993 bytes (4174 bytes decrease) Output file size = 19071 bytes (4198 bytes = 18.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/fitting_files/figure-html/unnamed-chunk-9-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29382 bytes Input file size = 29496 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23552 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23552 Output IDAT size = 23552 bytes (5830 bytes decrease) Output file size = 23630 bytes (5866 bytes = 19.89% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/fitting_files/figure-html/unnamed-chunk-13-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46530 bytes Input file size = 46668 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37352 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37352 Output IDAT size = 37352 bytes (9178 bytes decrease) Output file size = 37430 bytes (9238 bytes = 19.80% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/fitting_files/figure-html/unnamed-chunk-16-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30785 bytes Input file size = 30899 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24364 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24364 Output IDAT size = 24364 bytes (6421 bytes decrease) Output file size = 24442 bytes (6457 bytes = 20.90% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/fitting_files/figure-html/unnamed-chunk-17-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31600 bytes Input file size = 31714 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24908 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24908 Output IDAT size = 24908 bytes (6692 bytes decrease) Output file size = 24986 bytes (6728 bytes = 21.21% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/fitting_files/figure-html/unnamed-chunk-26-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6560 bytes Input file size = 7418 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5673 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5666 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 4510 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 4510 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 4510 Output IDAT size = 4510 bytes (2050 bytes decrease) Output file size = 4588 bytes (2830 bytes = 38.15% decrease) --- finished re-building ‘fitting.Rmd’ --- re-building ‘intro.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/intro_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19794 bytes Input file size = 19896 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14933 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14933 Output IDAT size = 14933 bytes (4861 bytes decrease) Output file size = 15011 bytes (4885 bytes = 24.55% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/intro_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21514 bytes Input file size = 21616 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17227 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17227 Output IDAT size = 17227 bytes (4287 bytes decrease) Output file size = 17305 bytes (4311 bytes = 19.94% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/intro_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15476 bytes Input file size = 15566 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11207 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11207 Output IDAT size = 11207 bytes (4269 bytes decrease) Output file size = 11285 bytes (4281 bytes = 27.50% decrease) --- finished re-building ‘intro.Rmd’ --- re-building ‘outcomes.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/outcomes_files/figure-html/unnamed-chunk-3-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30278 bytes Input file size = 30392 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23814 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23814 Output IDAT size = 23814 bytes (6464 bytes decrease) Output file size = 23892 bytes (6500 bytes = 21.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/outcomes_files/figure-html/unnamed-chunk-5-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32176 bytes Input file size = 32290 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25339 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25339 Output IDAT size = 25339 bytes (6837 bytes decrease) Output file size = 25417 bytes (6873 bytes = 21.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/outcomes_files/figure-html/unnamed-chunk-7-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48573 bytes Input file size = 48711 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35463 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35463 Output IDAT size = 35463 bytes (13110 bytes decrease) Output file size = 35541 bytes (13170 bytes = 27.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/outcomes_files/figure-html/unnamed-chunk-8-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28123 bytes Input file size = 28237 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22401 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22401 Output IDAT size = 22401 bytes (5722 bytes decrease) Output file size = 22479 bytes (5758 bytes = 20.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/outcomes_files/figure-html/unnamed-chunk-10-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31012 bytes Input file size = 31126 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24573 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24573 Output IDAT size = 24573 bytes (6439 bytes decrease) Output file size = 24651 bytes (6475 bytes = 20.80% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/outcomes_files/figure-html/unnamed-chunk-12-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28167 bytes Input file size = 28281 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22023 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22023 Output IDAT size = 22023 bytes (6144 bytes decrease) Output file size = 22101 bytes (6180 bytes = 21.85% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/outcomes_files/figure-html/unnamed-chunk-14-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 69672 bytes Input file size = 69846 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 56297 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 56297 Output IDAT size = 56297 bytes (13375 bytes decrease) Output file size = 56375 bytes (13471 bytes = 19.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/outcomes_files/figure-html/unnamed-chunk-16-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27844 bytes Input file size = 27958 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22630 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22630 Output IDAT size = 22630 bytes (5214 bytes decrease) Output file size = 22708 bytes (5250 bytes = 18.78% decrease) --- finished re-building ‘outcomes.Rmd’ --- re-building ‘structures.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/structures_files/figure-html/unnamed-chunk-6-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24989 bytes Input file size = 25103 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19190 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19190 Output IDAT size = 19190 bytes (5799 bytes decrease) Output file size = 19268 bytes (5835 bytes = 23.24% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/structures_files/figure-html/unnamed-chunk-10-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38623 bytes Input file size = 38749 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30647 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30647 Output IDAT size = 30647 bytes (7976 bytes decrease) Output file size = 30725 bytes (8024 bytes = 20.71% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/structures_files/figure-html/unnamed-chunk-14-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26468 bytes Input file size = 26582 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21256 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21256 Output IDAT size = 21256 bytes (5212 bytes decrease) Output file size = 21334 bytes (5248 bytes = 19.74% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/structures_files/figure-html/unnamed-chunk-17-1.png 672x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 45596 bytes Input file size = 46514 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42560 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 41850 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 41850 Output IDAT size = 41850 bytes (3746 bytes decrease) Output file size = 41928 bytes (4586 bytes = 9.86% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/structures_files/figure-html/unnamed-chunk-20-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19399 bytes Input file size = 20281 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18207 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 17914 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14645 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14598 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14598 Output IDAT size = 14598 bytes (4801 bytes decrease) Output file size = 14676 bytes (5605 bytes = 27.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/structures_files/figure-html/unnamed-chunk-21-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29475 bytes Input file size = 29589 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23732 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23732 Output IDAT size = 23732 bytes (5743 bytes decrease) Output file size = 23810 bytes (5779 bytes = 19.53% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kDGLM.Rcheck/vign_test/kDGLM/vignettes/structures_files/figure-html/unnamed-chunk-22-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29527 bytes Input file size = 29641 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23876 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23876 Output IDAT size = 23876 bytes (5651 bytes decrease) Output file size = 23954 bytes (5687 bytes = 19.19% decrease) --- finished re-building ‘structures.Rmd’ SUMMARY: processing the following file failed: ‘example1.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.7
Check: installed package size
Result: NOTE installed size is 10.8Mb sub-directories of 1Mb or more: doc 9.9Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.2.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'example1.Rmd' using rmarkdown Quitting from example1.Rmd:329-363 [unnamed-chunk-17] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'left_join' applied to an object of class "NULL" --- Backtrace: ▆ 1. └─dplyr::left_join(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'example1.Rmd' failed with diagnostics: no applicable method for 'left_join' applied to an object of class "NULL" --- failed re-building 'example1.Rmd' --- re-building 'fitting.Rmd' using rmarkdown --- finished re-building 'fitting.Rmd' --- re-building 'intro.Rmd' using rmarkdown --- finished re-building 'intro.Rmd' --- re-building 'outcomes.Rmd' using rmarkdown --- finished re-building 'outcomes.Rmd' --- re-building 'structures.Rmd' using rmarkdown --- finished re-building 'structures.Rmd' SUMMARY: processing the following file failed: 'example1.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64