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CRAN Package Check Results for Package shinyscholar

Last updated on 2026-10-02 23:50:13 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.5 3.31 138.99 142.30 OK
r-devel-linux-x86_64-debian-gcc 0.4.5 2.36 103.23 105.59 OK
r-devel-linux-x86_64-fedora-clang 0.4.5 110.24 OK
r-devel-linux-x86_64-fedora-gcc 0.4.5 106.85 OK
r-devel-windows-x86_64 0.4.5 7.00 176.00 183.00 OK
r-patched-linux-x86_64 0.4.5 3.31 127.87 131.18 OK
r-release-linux-x86_64 0.4.5 3.21 128.00 131.21 OK
r-release-macos-arm64 0.4.5 1.00 120.00 121.00 OK
r-release-macos-x86_64 0.4.5 2.00 236.00 238.00 OK
r-release-windows-x86_64 0.4.5 7.00 66.00 73.00 ERROR
r-oldrel-macos-arm64 0.4.5 1.00 119.00 120.00 OK
r-oldrel-macos-x86_64 0.4.5 2.00 188.00 190.00 OK
r-oldrel-windows-x86_64 0.4.5 8.00 257.00 265.00 OK

Check Details

Version: 0.4.5
Check: dependencies in R code
Result: NOTE renv was unable to query available packages from the following repositories: - # https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib ------------- error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.rds' [error code 22] error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.gz' [error code 22] error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES' [error code 22] Flavor: r-release-windows-x86_64

Version: 0.4.5
Check: examples
Result: ERROR Running examples in 'shinyscholar-Ex.R' failed The error most likely occurred in: > ### Name: create_template > ### Title: Create a skeleton application containing empty modules > ### Aliases: create_template > > ### ** Examples > > td <- tempfile() > dir.create(td, recursive = TRUE) > > modules <- data.frame( + "component" = c("data", "data", "plot", "plot"), + "long_component" = c("Load data", "Load data", "Plot data", "Plot data"), + "module" = c("user", "database", "histogram", "scatter"), + "long_module" = c("Upload your own data", "Query a database to obtain data", + "Plot the data as a histogram", "Plot the data as a scatterplot"), + "map" = c(TRUE, TRUE, FALSE, FALSE), + "result" = c(FALSE, FALSE, TRUE, TRUE), + "rmd" = c(TRUE, TRUE, TRUE, TRUE), + "save" = c(TRUE, TRUE, TRUE, TRUE), + "download" = c(FALSE, FALSE, TRUE, TRUE), + "async" = c(TRUE, FALSE, FALSE, FALSE)) > > common_objects = c("raster", "histogram", "scatter") > > create_template(path = td, name = "demo", + common_objects = common_objects, modules = modules, + author = "Simon E. H. Smart", include_map = TRUE, include_table = TRUE, + include_code = TRUE, install = FALSE) Warning in url(sprintf("%s/%s", cran, path), open = "rb") : cannot open URL 'https://bioconductor.statistik.tu-dortmund.de/cran/web/packages/packages.rds': HTTP status was '404 Not Found' Error in url(sprintf("%s/%s", cran, path), open = "rb") : cannot open the connection to 'https://bioconductor.statistik.tu-dortmund.de/cran/web/packages/packages.rds' Calls: create_template ... <Anonymous> -> as.data.frame -> read_CRAN_object -> gzcon -> url Execution halted Flavor: r-release-windows-x86_64

Version: 0.4.5
Check: tests
Result: ERROR Running 'testthat.R' [13s] Running the tests in 'tests/testthat.R' failed. Complete output: > Sys.setenv("R_TEST" = "") > library(testthat) > library(shinyscholar) > library(shinytest2) > > test_check("shinyscholar") renv was unable to query available packages from the following repositories: - # https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib ------------- error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.rds' [error code 22] error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.gz' [error code 22] error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES' [error code 22] Saving _problems/test-create_template-50.R Saving _problems/test-create_template-55.R Saving _problems/test-create_template-60.R Saving _problems/test-create_template-65.R Saving _problems/test-create_template-147.R Saving _problems/test-create_template-192.R Saving _problems/test-create_template-240.R Saving _problems/test-create_template-275.R [ FAIL 8 | WARN 7 | SKIP 26 | PASS 117 ] ══ Skipped tests (26) ══════════════════════════════════════════════════════════ • On CRAN (26): 'test-downloads.R:6:5', 'test-downloads.R:37:5', 'test-downloads.R:52:5', 'test-downloads.R:71:5', 'test-helpers.R:7:5', 'test-metadata.R:98:5', 'test-plot_auto.R:7:5', 'test-plot_hist.R:20:5', 'test-plot_scatter.R:19:5', 'test-plot_semi.R:6:5', 'test-save_and_load.R:121:5', 'test-save_load.R:6:5', 'test-save_load.R:19:5', 'test-save_load.R:31:5', 'test-save_load.R:47:5', 'test-select_async.R:4:5', 'test-select_async.R:33:5', 'test-select_async.R:44:5', 'test-select_async.R:56:5', 'test-select_query.R:4:5', 'test-select_query.R:35:5', 'test-select_query.R:47:5', 'test-select_query.R:59:5', 'test-select_user.R:15:5', 'test-select_user.R:26:5', 'test-select_user.R:37:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-create_template.R:47:3'): Check create template returns expected errors ── `create_template(...)` threw an error with unexpected message. Expected match: "A package on CRAN already uses that name" Actual message: "cannot open the connection to 'https://bioconductor.statistik.tu-dortmund.de/cran/web/packages/packages.rds'" Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-create_template.R:47:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─shinyscholar::create_template(...) 7. ├─name %in% tools::CRAN_package_db()[, c("Package")] 8. └─tools::CRAN_package_db() 9. ├─base::as.data.frame(...) 10. └─tools:::read_CRAN_object(CRAN_baseurl_for_web_area(), "web/packages/packages.rds") 11. ├─base::gzcon(url(sprintf("%s/%s", cran, path), open = "rb")) 12. └─base::url(sprintf("%s/%s", cran, path), open = "rb") ── Failure ('test-create_template.R:52:3'): Check create template returns expected errors ── `create_template(...)` threw an error with unexpected message. Expected match: "The specified app directory already exists" Actual message: "cannot open the connection to 'https://bioconductor.statistik.tu-dortmund.de/cran/web/packages/packages.rds'" Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-create_template.R:52:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─shinyscholar::create_template(...) 7. ├─name %in% tools::CRAN_package_db()[, c("Package")] 8. └─tools::CRAN_package_db() 9. ├─base::as.data.frame(...) 10. └─tools:::read_CRAN_object(CRAN_baseurl_for_web_area(), "web/packages/packages.rds") 11. ├─base::gzcon(url(sprintf("%s/%s", cran, path), open = "rb")) 12. └─base::url(sprintf("%s/%s", cran, path), open = "rb") ── Failure ('test-create_template.R:57:3'): Check create template returns expected errors ── `create_template(...)` threw an error with unexpected message. Expected match: "modules must be a dataframe" Actual message: "cannot open the connection to 'https://bioconductor.statistik.tu-dortmund.de/cran/web/packages/packages.rds'" Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-create_template.R:57:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─shinyscholar::create_template(...) 7. ├─name %in% tools::CRAN_package_db()[, c("Package")] 8. └─tools::CRAN_package_db() 9. ├─base::as.data.frame(...) 10. └─tools:::read_CRAN_object(CRAN_baseurl_for_web_area(), "web/packages/packages.rds") 11. ├─base::gzcon(url(sprintf("%s/%s", cran, path), open = "rb")) 12. └─base::url(sprintf("%s/%s", cran, path), open = "rb") ── Error ('test-create_template.R:62:3'): Check create template returns expected errors ── Error in `url(sprintf("%s/%s", cran, path), open = "rb")`: cannot open the connection to 'https://bioconductor.statistik.tu-dortmund.de/cran/web/packages/packages.rds' Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-create_template.R:62:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─shinyscholar::create_template(...) 7. ├─name %in% tools::CRAN_package_db()[, c("Package")] 8. └─tools::CRAN_package_db() 9. ├─base::as.data.frame(...) 10. └─tools:::read_CRAN_object(CRAN_baseurl_for_web_area(), "web/packages/packages.rds") 11. ├─base::gzcon(url(sprintf("%s/%s", cran, path), open = "rb")) 12. └─base::url(sprintf("%s/%s", cran, path), open = "rb") ── Error ('test-create_template.R:145:5'): Check create template function works as expected ── Error in `url(sprintf("%s/%s", cran, path), open = "rb")`: cannot open the connection to 'https://bioconductor.statistik.tu-dortmund.de/cran/web/packages/packages.rds' Backtrace: ▆ 1. ├─withr::with_temp_libpaths(...) at test-create_template.R:137:3 2. │ └─base::force(code) 3. └─shinyscholar::create_template(...) at test-create_template.R:145:5 4. ├─name %in% tools::CRAN_package_db()[, c("Package")] 5. └─tools::CRAN_package_db() 6. ├─base::as.data.frame(...) 7. └─tools:::read_CRAN_object(CRAN_baseurl_for_web_area(), "web/packages/packages.rds") 8. ├─base::gzcon(url(sprintf("%s/%s", cran, path), open = "rb")) 9. └─base::url(sprintf("%s/%s", cran, path), open = "rb") ── Error ('test-create_template.R:189:5'): Check create template function works with false settings ── Error in `url(sprintf("%s/%s", cran, path), open = "rb")`: cannot open the connection to 'https://bioconductor.statistik.tu-dortmund.de/cran/web/packages/packages.rds' Backtrace: ▆ 1. ├─withr::with_temp_libpaths(...) at test-create_template.R:177:3 2. │ └─base::force(code) 3. └─shinyscholar::create_template(...) at test-create_template.R:189:5 4. ├─name %in% tools::CRAN_package_db()[, c("Package")] 5. └─tools::CRAN_package_db() 6. ├─base::as.data.frame(...) 7. └─tools:::read_CRAN_object(CRAN_baseurl_for_web_area(), "web/packages/packages.rds") 8. ├─base::gzcon(url(sprintf("%s/%s", cran, path), open = "rb")) 9. └─base::url(sprintf("%s/%s", cran, path), open = "rb") ── Error ('test-create_template.R:237:7'): Check async, no map runs correctly ── Error in `url(sprintf("%s/%s", cran, path), open = "rb")`: cannot open the connection to 'https://bioconductor.statistik.tu-dortmund.de/cran/web/packages/packages.rds' Backtrace: ▆ 1. ├─withr::with_temp_libpaths(...) at test-create_template.R:225:5 2. │ └─base::force(code) 3. └─shinyscholar::create_template(...) at test-create_template.R:237:7 4. ├─name %in% tools::CRAN_package_db()[, c("Package")] 5. └─tools::CRAN_package_db() 6. ├─base::as.data.frame(...) 7. └─tools:::read_CRAN_object(CRAN_baseurl_for_web_area(), "web/packages/packages.rds") 8. ├─base::gzcon(url(sprintf("%s/%s", cran, path), open = "rb")) 9. └─base::url(sprintf("%s/%s", cran, path), open = "rb") ── Error ('test-create_template.R:272:7'): Check async, with map runs correctly ── Error in `url(sprintf("%s/%s", cran, path), open = "rb")`: cannot open the connection to 'https://bioconductor.statistik.tu-dortmund.de/cran/web/packages/packages.rds' Backtrace: ▆ 1. ├─withr::with_temp_libpaths(...) at test-create_template.R:260:5 2. │ └─base::force(code) 3. └─shinyscholar::create_template(...) at test-create_template.R:272:7 4. ├─name %in% tools::CRAN_package_db()[, c("Package")] 5. └─tools::CRAN_package_db() 6. ├─base::as.data.frame(...) 7. └─tools:::read_CRAN_object(CRAN_baseurl_for_web_area(), "web/packages/packages.rds") 8. ├─base::gzcon(url(sprintf("%s/%s", cran, path), open = "rb")) 9. └─base::url(sprintf("%s/%s", cran, path), open = "rb") [ FAIL 8 | WARN 7 | SKIP 26 | PASS 117 ] Error: ! Test failures. Execution halted Flavor: r-release-windows-x86_64

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