CRAN Package Check Results for Maintainer ‘Selcuk Korkmaz <selcukorkmaz at gmail.com>’

Last updated on 2026-02-15 09:51:09 CET.

Package	ERROR	OK
bioLeak	1	13
fastml		14
genSEIR		14
MVN		14
PubChemR		14
rPDBapi		14

Package bioLeak

Current CRAN status: ERROR: 1, OK: 13

Version: 0.1.0
Check: examples
Result: ERROR Running examples in ‘bioLeak-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: audit_report > ### Title: Render an HTML audit report > ### Aliases: audit_report > > ### ** Examples > > set.seed(1) > df <- data.frame( + subject = rep(1:6, each = 2), + outcome = factor(rep(c(0, 1), 6)), + x1 = rnorm(12), + x2 = rnorm(12) + ) > > splits <- make_split_plan(df, outcome = "outcome", + mode = "subject_grouped", group = "subject", + v = 3, progress = FALSE) > > custom <- list( + glm = list( + fit = function(x, y, task, weights, ...) { + stats::glm(y ~ ., data = data.frame(y = y, x), + family = stats::binomial(), weights = weights) + }, + predict = function(object, newdata, task, ...) { + as.numeric(stats::predict(object, + newdata = as.data.frame(newdata), + type = "response")) + } + ) + ) > > fit <- fit_resample(df, outcome = "outcome", splits = splits, + learner = "glm", custom_learners = custom, + metrics = "auc", refit = FALSE, seed = 1) | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% > > audit <- audit_leakage(fit, metric = "auc", B = 5, perm_stratify = FALSE) | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% > > if (requireNamespace("rmarkdown", quietly = TRUE) && + requireNamespace("ggplot2", quietly = TRUE)) { + out_file <- audit_report(audit, output_dir = tempdir(), quiet = TRUE) + out_file + } Warning in file(con, "w") : cannot open file 'audit_report.knit.md': Read-only file system Error in file(con, "w") : cannot open the connection Calls: audit_report ... <Anonymous> -> <Anonymous> -> write_utf8 -> writeLines -> file Execution halted Flavor: r-patched-linux-x86_64

Package fastml

Current CRAN status: OK: 14

Package genSEIR

Current CRAN status: OK: 14

Additional issues

donttest

Package MVN

Current CRAN status: OK: 14

Package PubChemR

Current CRAN status: OK: 14

Package rPDBapi

Current CRAN status: OK: 14