CRAN Package Check Results for Maintainer ‘Sebastian Funk <sebastian.funk at lshtm.ac.uk>’

Last updated on 2025-12-28 01:49:20 CET.

Package	ERROR	NOTE	OK
EpiNow2		3	10
rbi			13
rbi.helpers			13
socialmixr	1		12

Package EpiNow2

Current CRAN status: NOTE: 3, OK: 10

Version: 1.7.1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘cmdstanr’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.7.1
Check: installed package size
Result: NOTE installed size is 147.3Mb sub-directories of 1Mb or more: doc 1.5Mb libs 143.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.7.1
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘cmdstanr’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.7.1
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package rbi

Current CRAN status: OK: 13

Package rbi.helpers

Current CRAN status: OK: 13

Package socialmixr

Current CRAN status: ERROR: 1, OK: 12

Version: 0.4.0
Check: tests
Result: ERROR Running 'testthat.R' [5s] Running the tests in 'tests/testthat.R' failed. Complete output: > # nolint start > library(testthat) > library(socialmixr) > # nolint end > > data.table::setDTthreads(1) > test_check("socialmixr") Saving _problems/test-matrix-57.R [ FAIL 1 | WARN 0 | SKIP 2 | PASS 33 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test-surveys.r:4:3', 'test-surveys.r:11:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-matrix.r:57:3'): (code run outside of `test_that()`) ─────────── Error in ``[.data.table`(survey$participants, , `:=`(sum_weight, nrow(.SD)), by = (dayofweek %in% 1:5), )`: attempt access index 53/53 in VECTOR_ELT Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-matrix.r:56:1 2. │ └─base::withCallingHandlers(...) 3. └─base::lapply(...) 4. └─socialmixr (local) FUN(X[[i]], ...) 5. ├─base::do.call(contact_matrix, x) at test-matrix.r:57:3 6. └─socialmixr (local) `<fn>`(...) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) [ FAIL 1 | WARN 0 | SKIP 2 | PASS 33 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'socialmixr.Rmd' using rmarkdown Quitting from socialmixr.Rmd:199-204 [unnamed-chunk-15] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 53/53 in VECTOR_ELT --- Backtrace: ▆ 1. └─socialmixr::contact_matrix(...) 2. ├─...[] 3. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'socialmixr.Rmd' failed with diagnostics: attempt access index 53/53 in VECTOR_ELT --- failed re-building 'socialmixr.Rmd' SUMMARY: processing the following file failed: 'socialmixr.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64