CRAN Package Check Results for Package scopr

Last updated on 2025-12-28 01:48:52 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.3.5	3.04	62.15	65.19	OK
r-devel-linux-x86_64-debian-gcc	0.3.5	2.19	43.72	45.91	OK
r-devel-linux-x86_64-fedora-clang	0.3.5			97.40	OK
r-devel-linux-x86_64-fedora-gcc	0.3.5	5.00	104.11	109.11	OK
r-devel-windows-x86_64	0.3.5	6.00	51.00	57.00	ERROR
r-patched-linux-x86_64	0.3.5	3.11	52.32	55.43	OK
r-release-linux-x86_64	0.3.5	2.83	53.80	56.63	OK
r-release-macos-arm64	0.3.5				OK
r-release-macos-x86_64	0.3.5	2.00	54.00	56.00	OK
r-release-windows-x86_64	0.3.5	5.00	67.00	72.00	OK
r-oldrel-macos-arm64	0.3.5				OK
r-oldrel-macos-x86_64	0.3.5	2.00	62.00	64.00	OK
r-oldrel-windows-x86_64	0.3.5	6.00	78.00	84.00	OK

Check Details

Version: 0.3.5
Check: examples
Result: ERROR Running examples in 'scopr-Ex.R' failed The error most likely occurred in: > ### Name: link_ethoscope_metadata_remote > ### Title: Link ethoscope metadata to the matching result files > ### Aliases: link_ethoscope_metadata_remote link_ethoscope_metadata > > ### ** Examples > > # Metadata with no region_id -> all regions will be loaded with the same metadata > dir <- paste0(scopr_example_dir(), "/ethoscope_results/") > data(no_region_id_metadata) > metadata <- link_ethoscope_metadata(no_region_id_metadata, dir) Error in `[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", : attempt access index 6/6 in VECTOR_ELT Calls: link_ethoscope_metadata -> build_query -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.3.5
Check: tests
Result: ERROR Running 'testthat.R' [4s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(scopr) Loading required package: behavr Loading required package: data.table Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > > test_check("scopr") Saving _problems/test-build_query-12.R Saving _problems/test-build_query-40.R Saving _problems/test-build_query-53.R Saving _problems/test-build_query-68.R Saving _problems/test-build_query-83.R machine_name date time test 1 E_014 2016-01-25 21:36:04 1 2 E_014 2016-02-17 <NA> 2 3 E_029 2016-01-25 <NA> 3 Saving _problems/test-build_query-110.R Saving _problems/test-link_ethocope_metadata-6.R Saving _problems/test-link_ethocope_metadata-24.R Saving _problems/test-link_ethocope_metadata-39.R Saving _problems/test-link_ethocope_metadata-60.R Saving _problems/test-link_ethocope_metadata-73.R Saving _problems/test-link_ethocope_metadata-94.R Saving _problems/test-link_ethoscope_metadata_remote-18.R Saving _problems/test-link_ethoscope_metadata_remote-55.R Saving _problems/test-load_ethoscope-11.R Saving _problems/test-load_ethoscope-23.R Saving _problems/test-load_ethoscope-36.R [ FAIL 17 | WARN 0 | SKIP 0 | PASS 17 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-build_query.R:12:3'): build query works when time is supplied ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr:::build_query(dir, query) at test-build_query.R:12:3 2. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 3. └─data.table:::`[.data.table`(...) ── Error ('test-build_query.R:40:3'): build_query with date, machine name, and ROIs, and two experiments on the same date, but different times! ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr:::build_query(dir, query) at test-build_query.R:40:3 2. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 3. └─data.table:::`[.data.table`(...) ── Error ('test-build_query.R:53:3'): build query works when only date supplied ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-build_query.R:53:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─scopr:::build_query(dir, query) 7. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 8. └─data.table:::`[.data.table`(...) ── Error ('test-build_query.R:68:3'): build query works when only date supplied and ROIs ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-build_query.R:68:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─scopr:::build_query(dir, query) 7. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 8. └─data.table:::`[.data.table`(...) ── Error ('test-build_query.R:83:3'): missing results! ───────────────────────── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-build_query.R:83:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─scopr:::build_query(dir, query) 7. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 8. └─data.table:::`[.data.table`(...) ── Error ('test-build_query.R:110:3'): build query works datetime is a datetime, not a string (https://github.com/rethomics/scopr/issues/16) ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr:::build_query(dir, query) at test-build_query.R:110:3 2. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 3. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethocope_metadata.R:6:3'): link_ethoscope_metadata with single file ── Error in ``[.data.table`(out, , `:=`(n, .N), keyby = key(out))`: attempt access index 3/3 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(test_file) at test-link_ethocope_metadata.R:6:3 2. ├─out[, `:=`(n, .N), keyby = key(out)] 3. └─data.table:::`[.data.table`(out, , `:=`(n, .N), keyby = key(out)) ── Error ('test-link_ethocope_metadata.R:24:3'): link_ethoscope_metadata with date and machine name ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(query, dir) at test-link_ethocope_metadata.R:24:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethocope_metadata.R:39:3'): link_ethoscope_metadata with name of a text csv ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(file, dir) at test-link_ethocope_metadata.R:39:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethocope_metadata.R:60:3'): link_ethoscope_metadata with date, machine name, and ROIs ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(query, dir) at test-link_ethocope_metadata.R:60:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethocope_metadata.R:73:3'): link_ethoscope_metadata with path ── Error in ``[.data.table`(out, , `:=`(n, .N), keyby = key(out))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(query, dir) at test-link_ethocope_metadata.R:73:3 2. ├─out[, `:=`(n, .N), keyby = key(out)] 3. └─data.table:::`[.data.table`(out, , `:=`(n, .N), keyby = key(out)) ── Error ('test-link_ethocope_metadata.R:94:3'): link_ethoscope_metadata detect duplicated rows ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-link_ethocope_metadata.R:94:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─scopr:::link_ethoscope_metadata(query, dir) 7. └─scopr:::build_query(result_dir, query, index_file) 8. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 9. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethoscope_metadata_remote.R:14:3'): link_ethoscope_metadata_remote with date and machine name ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr:::link_ethoscope_metadata_remote(...) at test-link_ethoscope_metadata_remote.R:14:3 2. └─scopr:::build_query(result_dir = remote_dir, query = query, index_file = index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethoscope_metadata_remote.R:51:3'): parse_query with date, machine name, and ROIs ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr:::link_ethoscope_metadata_remote(...) at test-link_ethoscope_metadata_remote.R:51:3 2. └─scopr:::build_query(result_dir = remote_dir, query = query, index_file = index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-load_ethoscope.R:11:3'): query ethoscopes functions ──────────── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(metadata, dir) at test-load_ethoscope.R:11:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-load_ethoscope.R:23:3'): query ethoscopes works ──────────────── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(metadata, dir) at test-load_ethoscope.R:23:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-load_ethoscope.R:36:3'): query ethoscopes works with multiple cores ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(query, dir) at test-load_ethoscope.R:36:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) [ FAIL 17 | WARN 0 | SKIP 0 | PASS 17 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64